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Quantitative Genetics Assignment 2 Solutions - Prof. S. Xu, Assignments of Botany and Agronomy

The solutions to question 1 and question 2 of assignment 2 in the quantitative genetics course (bpsc148). Genotype frequencies, a and d values, g values, interaction effects, and δw values.

Typology: Assignments

2009/2010

Uploaded on 03/28/2010

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Quantitative Genetics (BPSC148)
Assignment 2 - solutions
Question 1:
Genotype ac ac Ac ac Ac Ac
Genotypic Value 0.010 58.747 84.626
Frequency 0.64 0.32 0.04
(1) ,
0.04 0.5 0.32 0.20p=+×= 1 1 0.20 0.80qp
=
−= =
(2) 1
2
mid-point (84.626 0.010) 42.318 + = , 84.626 42.318 42.308a
=
−=,
58.747 42.318 16.429d=−=
, actual Mean is
( ) 2 20.1275M a p q pqd=−+ = 20.1275 42.318 22.1905
+=
(3) 1
: [ ( )] 0.8 [42.308 16.429 (0.8 0.2)] 41.732Ac q a d q p
α
=+=× + × =
2
: [ ( )] 0.2 [42.308 16.429 (0.8 0.2)] 10.433ac p a d q p
α
=− + =− × + × =−
12
41.732 ( 10.433) 52.165
α
αα
=−= = .
Genotype Frequency A - value D -deviation G - value
Ac Ac 0.04 83.465 -21.029 42.308
Ac ac 0.32 31.299 5.257 16.429
ac ac 0.64 -20.866 -1.314 -42.308
(4)
22
2 2 0.2 0.8 52.165 870.793
A
Vpq
α
==××× =
(5)
22
(2 ) (2 0.2 0.8 16.429) 27.639
D
V pqd==×××=
(6) 870.793 27.639 898.432
GAD
VVV=+= + =
pf2

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Quantitative Genetics (BPSC148)

Assignment 2 - solutions

Question 1 :

Genotype ac ac Ac ac Ac Ac

Genotypic Value 0.010 58.747 84.

Frequency 0.64 0.32 0.

(1) p = 0.04 + 0.5 × 0.32 = 0.20, q = 1 − p = 1 − 0.20 =0.

1 2 mid-point = × (84.626 + 0.010) = 42.318, a = 84.626 − 42.318 = 42.308,

d = 58.747 − 42.318 =16.

M = a p ( − q ) + 2 pqd = −20.1275 , actual Mean is−20.1275 + 42.318 =22.

(3) Ac : α 1 = q a [ + d q ( − p )] = 0.8 ×[42.308 + 16.429 × (0.8 − 0.2)] =41.

ac : α 2 = − p a [ + d q ( − p )] = −0.2 × [42.308 + 16.429 × (0.8 − 0.2)] = −10.

Genotype Frequency A - value D -deviation G - value

Ac Ac 0.04 83.465 -21.029 42.

Ac ac 0.32 31.299 5.257 16.

ac ac 0.64 -20.866 -1.314 -42.

2 2

VA = 2 pq α = 2 × 0.2 × 0.8 × 52.165 =870.

2 2 VD = (2 pqd ) = (2 × 0.2 × 0.8 ×16.429) =27.

G A D

V = V + V = + =

Quantitative Genetics (BPSC148)

Assignment 2 – solutions (continued)

Question 2 :

Plant

Thrips line 1 (E 1 ) 2 (E 2 ) 3 (E 3 )

I (G 1 ) 77 61 40

II (G 2 ) 34 159 71

II (G 3 ) 47 51 107

.

G = + + = , .

G = + + = , .

G = + + =

E = + + = ,

E = + + = ,

E = + + =

Interaction effects:

Δ W 11 = 77 − 59.333 − 52.667 + 71.889 =36.

Δ W 21 = 34 − 88 − 52.667 + 71.889 = −34.

Δ W 31 = 47 − 68.333 − 52.667 + 71.889 = −2.

Δ W 12 = 61 − 59.333 − 90.333 + 71.889 = −16.

Δ W 22 = 159 − 88 − 90.333 + 71.889 =52.

Δ W 32 = 51 − 68.333 − 90.333 + 71.889 = −35.

Δ W 13 = 40 − 59.333 − 72.667 + 71.889 = −20.

Δ W 23 = 71 − 88 − 72.667 + 71.889 = −17.

Δ W 33 = 107 − 68.333 − 72.667 + 71.889 =37.

Δ W matrix:

36.88889 -16.7778 -20.

-34.7778 52.55556 -17.

-2.11111 -35.7778 37.