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Carboxylic Acid Derivatives: Nucleophilic Substitution Reactions, Study notes of Biochemistry

An in-depth exploration of carboxylic acid derivatives, focusing on their nomenclature, structure, and reactivity. various types of derivatives, including esters, amides, acid chlorides, and acid anhydrides, and discusses their preparation, properties, and reactions. The document also delves into nucleophilic acyl substitution mechanisms for acid chlorides and anhydrides, as well as their reactions with alcohols, ammonia, and water. Esters and their physical properties, reactions, and synthesis are also discussed.

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Chapter 20:
Chapter 20:
Carboxylic Acid Derivatives:
Carboxylic Acid Derivatives: Nucleophilic
Nucleophilic
Acyl
Acyl Substitution
Substitution
20.1:
20.1:
Nomenclature of Carboxylic Acid Derivatives
Nomenclature of Carboxylic Acid Derivatives
(please read)
(please read)
O
C
OH
R
O
C
OR'
R
carboxylic acid
-oic acid
ester
-oate
O
C
O
R
R'
lactone
cyclic ester
O
C
ClR
acid chloride
-oyl chloride
O
C
OR
O
C
R
acid anhydride
-oic anhydride
O
C
NR
R'
R''
amide
-amide
O
C
NR
R'
lactam
cyclic amide
R''
RCN
nitrile
-nitrile
166
Y = a leaving group
-Cl, -O2CR’, -OR’, -OH, -NR2,
20.3: General Mechanism for Nucleophilic Acyl Substitution
Mechanism occurs in two stages. The first is addition of the
nucleophile to the carbonyl carbon to form a tetrahedral
intermediate. The second stage in collapse of the tetrahedral
intermediate to reform a carbonyl with expulsion of a leaving
group (Y). There is overall substitution of the leaving group (Y)
of the acid derivative with the nucleophile.
RY
C
O
:Nu-H
Nu
C
O
Y
RRNu
C
O+ Y:H
tetrahedral
intermediate
H
pf3
pf4
pf5
pf8
pf9
pfa
pfd

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Chapter 20: Chapter 20: Carboxylic Acid Derivatives:Carboxylic Acid Derivatives: NucleophilicNucleophilic

Acyl Acyl SubstitutionSubstitution

20.1: 20.1: Nomenclature of Carboxylic Acid DerivativesNomenclature of Carboxylic Acid Derivatives

(please read) (please read)

O R^ C^ OH O R^ C^ OR'

carboxylic acid

- oic acid

ester

- oate O R^ C^ O R'

lactone

cyclic ester

O R^ C^ Cl

acid chloride

- oyl chloride O R^ C^ O O C (^) R

acid anhydride

- oic anhydride O R^ C^ N R' R''

amide

- amide O R^ C^ N R'

lactam

cyclic amide

R'' R C N

nitrile

- nitrile 166

Y = a leaving group

-Cl, -O 2 CR’, -OR’, -OH, -NR 2 ,

20.3: General Mechanism for Nucleophilic Acyl Substitution

Mechanism occurs in two stages. The first is addition of the

nucleophile to the carbonyl carbon to form a tetrahedral

intermediate. The second stage in collapse of the tetrahedral

intermediate to reform a carbonyl with expulsion of a leaving

group (Y). There is overall substitution of the leaving group (Y)

of the acid derivative with the nucleophile.

R Y

C

O

:Nu-H Nu

C

O

Y

R (^) R CNu

O + Y:H

tetrahedral

intermediate

H

20.2:20.2: Structure and Reactivity of Carboxylic Acid DerivativesStructure and Reactivity of Carboxylic Acid Derivatives

Increasing reactivity R CCl O R CN O R CO O C (^) R' O R COR' O amide ester acid anhydride acid chloride

All acyl derivatives

are prepared directly

from the carboxylic acid.

Less reactive acyl

derivative (amides

and esters) are more

readily prepared from

more reactive acyl

derivatives (acid

chlorides and anhydrides)

carboxylic acid amide acid chloride acid anhydride ester (^) amide acid anhydride ester (^) amide ester amide 168

The reactivity of the acid derivative is related to it resonance

stabilization. The C-N bond of amides is significantly stabilized

through resonance and is consequently, the least reactive acid

derivative. The C-Cl bond of acid chlorides is the least stabilized

by resonance and is the most reactive acid derivative

R CCl O R CN O R CO O C (^) R' O R COR' O amide^ ester acid anhydride acid chloride

20.5: Nucleophilic Acyl Substitution in Acid Anhydrides20.5: Nucleophilic Acyl Substitution in Acid Anhydrides

Prepared from acid chlorides and a carboxylic acidPrepared from acid chlorides and a carboxylic acid

Reactions of acid anhydrides

Acid anhydrides are slightly less reactive reactive that acid

chlorides; however, the overall reactions are nearly identical and

they can often be used interchangeably.

1. Alcoholysis to give esters

2. Aminolysis to give amides

3. Hydrolysis to give carboxylic acids

20.6: Sources of Esters

Preparation of esters (Table 20.3, p. 843)

1. Fischer Esterification (Ch. 15.

2. Reaction of acid chlorides or acid anhydrides with alcohols

3. Baeyer-Villiger oxidation of ketones (Ch. 17.16)

4. SN2 reaction of carboxylate anions with alkyl halides

20.7: Physical Properties of Esters. (please read)

20.8: Reactions of Esters: A Review and a Preview.

Esters react with Grignard reagents to give tertiary alcohols.

two equivalents of the Grignard reagents adds to the carbonyl

carbon. (Ch. 14.10)

Esters are reduced by LiAlH 4 (but not NaBH 4 ) to primary alcohols.

(Ch. 15.3)

Nucleophilic acyl substitution reactions of esters (Table 20.5).

Esters are less reactive toward nucleophilic acyl substitution than

Acid chlorides or acid anhydrides.

1. Aminolysis: Esters react with ammonia, 1° amd 2° amines to

give amides

2. Hydrolysis: Esters can be hydrolyzed to carboxylic acids under

basic conditions or acid-catalysis.

20.11: Reaction of Esters with Ammonia and Amines.

Esters react with ammonia, 1°, and 2° amines to give amides

Mechanism, Fig. 20.5, p. 853.

NH 2 + OCH 3 NH +^ HOCH 3

pKa~ 10 pKa~^16

20.12: Amides

N H O H 3 C CH 3 N H O H 3 C CH 3 N O coplanar

amide bond has a large

dipole moment ~ 3.5 Debye

H 2 O = 1.85 D

NH 3 = 1.5 D

H 3 CNO 2 = 3.

The N-H bond of an amide is a good hydrogen bond donor and

The C=O is a good hydrogen bond acceptor.

R N O H R N O H N N O R H O N N R O H R N N N N H R O H O H R R H O O R R H H O N H O

Acidity of Amides: The resulting negative charge from

deprotonation of an amide N-H, is stabilized by the carbonyl

O H H O H

  • H 2 O
  • H 3 O O H N O H
  • H 2 O (^) N O N O pKa ~ 17 - 19 pKa ~ 15
  • H 3 O

CH 3 CH 2 NH 2 N

O H H N O H O OH O p Ka ~ 35 - 40 ~ 15 ~ 10 ~ 5 Increasing reactivity 180

Synthesis of Amides: Amides are most commonly prepared from

the reactions of ammonia, 1° or 2° amines with acids chlorides,

acid anhydrides or esters. This is a nucleophilic acyl substitution

reaction.

When an acid chloride or anhydride is used, a mol of acid (HCl

or carboxylic acid) is produced. Since amines are bases, a

second equivalent is required (or an equivalent of another

base such as hydroxide or bicarbonate) is required to

neutralize the acid

R CCl

O

R CN

O

acid chloride

R'NH 2

R COH

O

carboxylic acid SOCl 2 R' 2 NH

NH 3

di-substitiuted R' ( 3 °) amide R'

R CN H

O

R'

R CNH 2

O

mono-substitiuted ( 2 °) amide unsubstitiuted ( 1 °) amide

20.16: Hydrolysis of Nitriles. Nitriles are hydrolyzed in either

aqueous acid or aqueous base to give carboxylic acids. The

corresponding primary amide is an intermediate in the reaction.

Base-promoted mechanism (Fig. 20.8, p. 865)

Acid-promoted hydrolysis:

20.17: Addition of Grignard Reagents to Nitriles. One equiv.

of a Grignard Reagent will add to a nitrile. After aqueous acid

work-up, the product is a ketone.

aldehydes

& ketones

μ~ 2.8 D

C

O

R

N

C! +

nitriles

μ ~ 3.9 D

R C N

H 3 C MgBr

R

N

C

CH 3

MgBr THF H^3 O

R

NH

C CH

3 R

O

C

CH 3

Must consider functional group compatibility; there is wide

flexibility in the choice of Grignard reagents.

Na+^ - CN Br C!N (^) O MgBr H 3 O+ CO 2 H ketones carboxylic acids SN 2

20.18: Spectroscopic Analysis of Carboxylic Acid Derivatives

IR: typical C=O stretching frequencies for:

carboxylic acid: 1710 cm-

ester: 1735 cm-

amide: 1690 cm-

aldehyde: 1730 cm-

ketone 1715 cm-

anhydrides 1750 and 1815 cm-

Conjugation (C=C π -bond or an aromatic ring) moves the C=O

absorption to lower energy (right) by ~15 cm-

OCH 3 O OCH 3 O OCH 3 O NH 2 O NH 2 O NH 2 O aliphatic ester 1735 cm-^1 conjugated ester 1725 cm-^1 aromatic ester 1725 cm-^1 aliphatic amide 1690 cm-^1 conjugated amide 1675 cm-^1 aromatic amide 1675 cm-^1 186

1 H NMR:

Protons on the α-carbon (next to the C=O) of esters and amides

have a typical chemical shift range of δ 2.0 - 2.5 ppm

Proton on the carbon attached to the ester oxygen atom have a

typical chemical shift range of δ 3.5 - 4.5 ppm

The chemical shift of an amide N-H proton is typically between

5-8 ppm. It is broad and often not observed.

δ 3. 2H, q, J= 7. δ 1. 3H, t, J= 7. δ 2. 3H, s

NH

O H 3 C C N C H 2 C H 3 H δ = 4. q, J =7.2 Hz, 2H δ = 2. s, 3H δ = 1. t, J =7.2 Hz, 3H C C O O C C H H H H H H H H

C 11 H 12 O 2

166.9^ CDCl 3

δ 7. 1H, d, J= 15. δ 6. 1H, d, J= 15. δ 7. 2H, m δ 7. 3H, m (^) δ 4. 2H, q, J= 7. δ 1. 3H, t, J= 7.

1 H NMR

13 C NMR

TMS

IR

C 10 H 11 N

(5H, m)

**(1H, t, J=7.1)

(3H, t, J=7.4)**

(2H, dq, J=7.4, 7.1) CDCl 3 120.7 TMS