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Cellular Respiration and Fermentation Laboratory, Lab Reports of Cell Biology

Procedure consist of CO2 production during aerobic respiration, Anaerobic Fermentation

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BIO 3A Lab: Cellular Respiration (02/09) Page 1 of 4
Biology 3A LABORATORY
Cellular Respiration and Fermentation
Objectives
To study processes of anaerobic and aerobic respiration
To determine the amount of oxygen consumed during aerobic respiration
To determine the amount of carbon dioxide produced during aerobic respiration
To study the effect of substrate difference on anaerobic respiration in yeast
To investigate the process of fermentation used in food making
PLEASE BRING A USB THUMBDRIVE TO LAB TODAY
Introduction
All living organisms require energy in order to sustain the many processes involved in life.
The energy f or these processes is provided by cellular respiration, a catabolic process that
releases energy (exergonic), most often as ATP. It is essential that the chemical reactions
involved in cellular respiration occur at a rapid rate and within optimum conditions. Enzymes
are critical in this process.
Aerobic respiration in germinating peas
Cellular respiration involves glycolysis, the Krebs cycle and the electron transport chain.
As you may recall from lecture, glycolysis is essentially an anaerobic process since it is not
dependent upon the presence of oxygen. The fate of pyruvate, the end product of glycolysis, is
dependent on the presence of oxygen. If oxygen is not present, the two pyruvates (from the
complete oxidation of one glucose molecule) will r emain in the cytosol and undergo the
anaerobic process called fermentation. There is no “ extra” energy yield from fermentation. If
oxygen is present, the pyruvates will be shuttled to a mitochondrion, altered and enter into a
series of reactions involving the Krebs cycle and the Electron Transport Chain (ETC). Both of
these processes are dependent on the presence of oxygen and ar e aerobic in nature. T he
Krebs cycle only produces 1 ATP molecule directly per cycle. However, it is indirectly
responsible for the greatest ATP production by generating coenzymes, both NADH and FADH
2
.
When these coenzymes are reoxidized in the electron transport chain, many molecules of ATP
are generated (a theoretical 36 – 38 ATP per glucose). Many living organisms undergoing
aerobic respiration will use oxygen and produce carbon dioxide.
In th is lab you will indirectly determine metabolic rate during aerobic respiration in
germinating peas placed in a manometer (a closed chamber) by monitoring the amount of CO
2
produced.
Procedure A:
Setup:
1. Obtain 10 – 12 four- to six-day old germ inating peas, determine the mass and record the
mass on Table 3.
2. Obtain one Pasco Xplorer GLX data l ogger, CO
2
probe and the CO
2
measurement
container.
3. To the container, add a 2 cm ball of absorbent cotton to the bottom.
4. Add normal peas to the container.
5. Wrap the container with aluminum foil to inhibit photosynthesis.
6. Place the CO
2
probe onto the container.
BIO 3A Lab: Cellular Respiration (02/09) Page 2 of 4
Measurement:
1. Connect the CO
2
probe to the Xplorer GLX WITHOUT tipping the container upside down (do
not let the wet peas hit the measuring probe) to one of the four PASPORT sensor ports
(They look like serial cable ports at the top end of the screen).
2. Turn on the GLX (small green button on the bottom left hand side of the handle)
3. If the Graph is not already displayed on the screen press the Home Screen ( ) and F1
( ) at the same time to go to the Graph.
4. If you need to start a new graph, Press F4 then press #7 to start a new graph ready to
display data from the PASPORT sensor.
5. Equilibrate the sealed peas in the container for 5 minutes on the table. Do not handle the
containers with your warm hands to assure accurate results.
6. After five minutes, Press to start data recording for 10 minutes.
7. To stop data recording, press again.
8. Press the Home Screen ( ) button for the menu display.
9. Use the cursor and select Graph menu and press activate ( ).
10. Return the peas to the original container and discard the used cotton ball. Clean out the
container if need be. Do not remove the aluminum foil.
11. Obtain a new 2 cm cotton ball and repeat the procedure with the freeze/thawed peas.
To Download your data to your USB device:
1. Attach your USB drive to the USB port on the right side of the display to save your file to
your USB drive.
2. Select Data Files, press ( ).
3. Select the file and press F1. Next to the name, it should say [Open].
4. Press Home ( ).
5. Cursor down to Table and press activate ( ).
6. Press F4 and cursor down to Export All Data and press ( ).
7. Your data should be downloaded to you drive.
8. Open Excel and select the file (Export file) from your drive. The Text Import Wizard will
pop-up.
9. Click Next. Make sure that TAB is selected (that’s the default) on the Tab Delimiters and
click next.
10. Using Excel, select scatter plot for the entire 10 minute duration. Add a trendline with the
equation and r
2
value.
11. Return the peas to the original container and discard the used cotton ball. Clean out the
container for the next group.
CO
2
production during aerobic respiration
From the acid, bases an d buffers lab, you sho uld recall that CO
2
can combine with wa ter to
form carbonic acid, which dissociate as follows:
CO
2
+ H
2
O  H
2
CO
3
 H
+
+ HCO
3
-
 H
+
+ H
+
+ CO
3
2
-
(3)
pf2

Partial preview of the text

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BIO 3A Lab: Cellular Respiration (02/09)

Page 1 of 4

Biology 3A LABORATORYCellular Respiration and Fermentation Objectives

•^

To study processes of anaerobic and aerobic respiration

-^

To determine the amount of oxygen consumed during aerobic respiration

-^

To determine the amount of carbon dioxide produced during aerobic respiration

-^

To study the effect of substrate difference on anaerobic respiration in yeast

-^

To investigate the process of fermentation used in food making

PLEASE BRING A USB THUMBDRIVE TO LAB TODAY Introduction

All living organisms require energy in order to sustain the many processes involved in life. The energy for these processes is provided by

cellular respiration

, a catabolic process that

releases energy (exergonic), most often as ATP.

It is essential that the chemical reactions

involved in cellular respiration occur at a rapid rate and within optimum conditions.

Enzymes

are critical in this process. Aerobic respiration in germinating peas

Cellular respiration involves

glycolysis

, the

Krebs cycle

and the

electron transport chain

As you may recall from lecture, glycolysis is essentially an anaerobic process since it is notdependent upon the presence of oxygen.

The fate of pyruvate, the end product of glycolysis, is

dependent on the presence of oxygen.

If oxygen is not present, the two pyruvates (from the

complete oxidation

of

one glucose molecule) will remain

in

the cytosol and

undergo

the

anaerobic process called

fermentation

.^

There is no “extra” energy yield from fermentation.

If

oxygen is present, the pyruvates will be shuttled to a mitochondrion, altered and enter into aseries of reactions involving the Krebs cycle and the Electron Transport Chain (ETC).

Both of

these processes are dependent on the presence of oxygen and are aerobic in nature.

The

Krebs

cycle

only produces

ATP

molecule

directly per

cycle.

However,

it

is

indirectly

responsible for the greatest ATP production by generating coenzymes, both NADH and FADH

When these coenzymes are reoxidized in the electron transport chain, many molecules of ATPare generated (a theoretical 36 – 38 ATP per glucose).

Many living organisms undergoing

aerobic respiration will use oxygen and produce carbon dioxide.

In^

this

lab

you

will

indirectly

determine

metabolic

rate

during

aerobic

respiration

in

germinating peas placed in a manometer (a closed chamber) by monitoring the amount of CO

2

produced. Procedure A

Setup: 1.^

Obtain 10 – 12 four- to six-day old germinating peas, determine the mass and record themass on Table 3.

2.^

Obtain

one

Pasco

Xplorer

GLX

data

logger,

CO

2

probe

and

the

CO

2

measurement

container.

3.^

To the container, add a 2 cm ball of

absorbent

cotton to the bottom.

4.^

Add normal peas to the container.

5.^

Wrap the container with aluminum foil to inhibit photosynthesis.

6.^

Place the CO

probe onto the container. 2

BIO 3A Lab: Cellular Respiration (02/09)

Page 2 of 4

Measurement

1.^

Connect the CO

probe to the Xplorer GLX 2

WITHOUT

tipping the container upside down (do

not let the wet peas hit the measuring probe) to one of the four PASPORT sensor ports(They look like serial cable ports at the top end of the screen).

2.^

Turn on the GLX (small green button on the bottom left hand side of the handle)

3.^

If the Graph is not already displayed on the screen press the Home Screen (

) and F

(^

) at the same time to go to the Graph.

4.^

If you

need to start a new graph, Press F4 then press #7 to start a new graph ready to display data from the PASPORT sensor.

5.^

Equilibrate the sealed peas in the container for 5 minutes on the table.

Do not handle the

containers with your warm hands to assure accurate results.

6.^

After five minutes, Press

to start data recording for 10 minutes.

7.^

To stop data recording, press

again.

8.^

Press the Home Screen (

) button for the menu display.

9.^

Use the cursor and select Graph menu and press activate (

  1. Return the peas to the original container and discard the used cotton ball.

Clean out the

container if need be. Do not remove the aluminum foil.

  1. Obtain a new 2 cm cotton ball and repeat the procedure with the freeze/thawed peas.To Download your data to your USB device: 1.^

Attach your USB drive to the USB port on the right side of the display to save your file toyour USB drive.

2.^

Select Data Files, press (

3.^

Select the file and press F1. Next to the name, it should say [Open].

4.^

Press Home (

5.^

Cursor down to Table and press activate (

6.^

Press F4 and cursor down to Export All Data and press (

7.^

Your data should be downloaded to you drive.

8.^

Open Excel and select the file (Export file) from your drive.

The Text Import Wizard will

pop-up.

9.^

Click Next.

Make sure that TAB is selected (that’s the default) on the Tab Delimiters and

click next.

  1. Using Excel, select scatter plot for the entire 10 minute duration.

Add a trendline with the

equation and r

2 value.

  1. Return the peas to the original container and discard the used cotton ball.

Clean out the

container for the next group. CO

production during aerobic respiration 2 From the acid, bases and buffers lab, you should recall that CO

can combine with water to 2

form carbonic acid, which dissociate as follows:

CO

+ H 2

O 2

H

CO 2

H

+^ + HCO

-^3

H

+^ + H

+^ + CO

2 - 3

BIO 3A Lab: Cellular Respiration (02/09)

Page 3 of 4

In this exercise, you will indirectly determine the amount of CO

produced during cellular 2

respiration in a plant and an aquatic animal.

You will use phenolphthalein to detect changes in

pH resulting from CO

production (H 2

CO 2

Recall that phenolphthalein is red in basic solutions

and colorless in acidic solutions.

Since we are not directly measuring CO

production, calculate 2

a relative measure of respiration by measuring the volume of NaOH required to neutralizecarbonic acid. Procedure B Setup & Volume determination 1.^

Place

ml

of

the

dechlorinated

water

in

each

of

the

three

labeled

ml

beakers(“control”, “fish”, and “plant”). The solution has been made slightly acidic.

2.^

Obtain one goldfish and a 6 cm piece of

Elodea

.^

Rinse the

Elodea

to remove any other

organisms (snails, worms, algae, etc.)

3.^

Place 75 ml of dechlorinated water in a 150 ml beaker.

4.^

Place the beaker on a top loading balance are tare the balance. Carefully remove thegoldfish with a net, and remove as much water as possible.

Place the goldfish into the tared

beaker and record its weight. Record the weight on your worksheet. Place the goldfish intothe experimental beaker. Weight the

Elodea

in the same fashion and place it into the other

experimental beaker.

5.^

Cover each beaker with Parafilm.

6.^

Place the beaker with the

Elodea

in the

dark

7.^

Allow the organisms to respire for 20 minutes.

8.^

Carefully remove the organisms from the beaker and return them to the original containers.

Do not lose the water in the experimental beakers!

Titration 9.^

Add four drops of phenolphthalein to the contents of each experimental beaker. The solutionshould be clear.

  1. Obtain an eyedropper of 0.2M NaOH.

Add the NaOH drop by drop to the contents of the

control beaker.

Mix thoroughly after each drop.

Continue adding drops until the solution is

pink. Convert the number of drops to ml (there’s approximately 20 drops/ml).

  1. Repeat the step for the remaining two experimental beakers until the solutions are the same

shade of pink as the control beaker. Record your data on Table 2. Calculations 12. The relative respiration rate for each organism, for twenty minutes, is the number of ml

NaOH added to the organism’ water minus ml of NaOH added to the control water.

  1. The mass-specific metabolic rate is the relative respiration rate divided by the weight of the

organism.

BIO 3A Lab: Cellular Respiration (02/09)

Page 4 of 4

Anaerobic Fermentation

Fermentation involves the oxidation of NADH by the removal of electrons (or hydrogen ions) from the NADH + H

+^ and their acceptance by pyruvate, forming either

lactic acid

or

ethyl

alcohol

.^

The products, which result from the reduction of pyruvate, depend upon the presence

of the specific enzymes of the organisms involved.

Many cells are capable of fermentation, but

animal cells can produce only lactic acid.

Prokaryotic cells can produce not only lactic acid, but

also many other products, including ethyl alcohol.

Yeast and certain other fungi are known for

their fermentation abilities, producing ethyl alcohol and CO

in the process. In this exercise, you 2

will study anaerobic respiration in yeast. Procedure C

1.^

Obtain three fermentation tubes

2.^

To tube #1 add 10 ml of DI water.

3.^

To tube #2 add 10 ml of the warm sucrose solution.

4.^

Test tube #3 add 10 ml of the corn syrup solution.

5.^

Obtain more fermentation tubes if there are other possible substrates available.

6.^

Add 5 ml of activated yeast solution to each tube and carefully mix the solutions.

7.^

Carefully tip the fermentation tubes to remove air bubbles as directed by your instructor.

8.^

Place a cork on each of the tubes.

9.^

Place the fermentation tubes in the 40˚C waterbath.

  1. Record and measure any gas production with a millimeter ruler every 5 minutes for 30

minutes. Note any changes in the appearance of the tubes.

Anaerobic respiration and food items

Microbes have adapted to live virtually anywhere on Earth.

Given time, microbes can

evolve to the given set of environmental conditions and thrive.

Since we do not live in a sterile

environment, we have learned to cope with microbes.

We often ingest microbes when we eat.

For the most part, these microbes do not affect us. However, some microbes can cause illness,infections and diseases.

We have developed a symbiotic relationship with certain microbes.

Take for instance the various types of bacterial we have living on us and with our intestines. Weprovide the microbes within our intestines with a “home” and food.

In return, they assist us in

fighting off pathogens and provide some nutrients.

About a thousand years ago, our ancestors began utilizing beneficial strains of microbes in preserving

food.

There

are

literally hundreds

of

food

items

world

wide

that

result

from

fermentation.

Most of these food items were the result of microbial interactions in detoxifying

substances.

Europeans have long use microbes to produce wine as a source of “clean” water.

Bulgarians were one of the first to preserve milk in the form of yogurt and cheese.

Many of the

items that we find at our grocery stores were developed from fermentation (sauerkraut, pickles,kim chi, kefir, etc.).

In this section, you may use the microbes found in various grocery items to examine the natural fermentation process.

We will use the ancient art of pickling to examine anaerobic

fermentation

of

sugars

to

lactic acid.

The

acid

will lower

the

pH,

therefore

creating

an

environment in which food-spoiling organisms can not grow.

After the fermentation process,

we’ll try the products, as long as there is not an overabundance of fermentation bacteria presentand there has not been any spoilage (which should not occur, but could).