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BI 381: Exam 1 - Spring 2008: Genetics and Molecular Biology - Prof. Allen C. Gathman, Exams of Molecular biology

The instructions and questions for exam 1 of bi 381: genetics and molecular biology, held in spring 2008. The exam covers various topics such as dna structure, replication, and techniques used in molecular biology. Students are required to fill in missing bases in a dna molecule, propose experiments to test hypotheses, and explain the mechanisms of different problems in e. Coli replication.

Typology: Exams

Pre 2010

Uploaded on 08/08/2009

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BI 381: EXAM 1–
Spring 2008
Instructions:
a. Relax. b. Write your name on the back of the last page ONLY.
1. a. (20 points) Fill in the rest of this two base-pair DNA molecule. Show covalent bonds as
lines, hydrogen bonds as dotted lines, double bonds as double lines, carbons in a ring as
corners, and other atoms as their atomic symbols. You need not show hydrogens unless they
are part of hydrogen bonds or have some other functional significance.
MARK THE 5' and 3' ends of EACH STRAND.
pf3
pf4
pf5

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BI 381: EXAM 1–

Spring 2008

Instructions: a. Relax. b. Write your name on the back of the last page ONLY.

  1. a. (20 points) Fill in the rest of this two base-pair DNA molecule. Show covalent bonds as lines, hydrogen bonds as dotted lines, double bonds as double lines, carbons in a ring as corners, and other atoms as their atomic symbols. You need not show hydrogens unless they are part of hydrogen bonds or have some other functional significance. MARK THE 5' and 3' ends of EACH STRAND.
  1. Avery, MacLeod, and McCarty were trying to find out what the genetic material (also known in this case as the "transforming principle") was. Griffith had hypothesized that the transforming principle was a polysaccharide. a. (15 points) Propose an experiment to test Griffith's hypothesis, assuming that you have a well-equipped modern lab (one with all sorts of pure enzymes available). Describe clearly what you would do and how you would detect the results. b. (5 points) What observable results would Griffith's hypothesis predict you would get when you do your experiment as described in part a?
  1. (5 points each) Explain how each of the following problems is solved in E. coli replication. In each case, specify the enzymes involved and explain what they do to solve the problem. a. Pol III needs a primer with a 3' end to start replication, but the DNA is circular. b. As the strands of the template DNA molecule are separated, other parts of the molecule become supercoiled. c. There is RNA in the newly synthesized polynucleotide strands. d. The lagging strand is in short segments, rather than a continuous polynucleotide strand.
  1. (5 points each) a. What's the difference between a Southern blot and a Northern blot? b. You email me and I send you some of the Mep1 gene from Coprinus cinereus. Is this a probe? If not, what does it need in order to be one? Explain. c. You know how big the human genome is. If you have 1 microgram of human genomic DNA, how many copies of the genome do you have? Show your work. d. When you do agarose gel electrophoresis, which DNA fragments wind up closest to the positive electrical terminal? Why?