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exam 4 uconn patricia rosssi study guide for final
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Fundamentals of Micro-Rossi section Study Guide Exam #4 : End Chapter 6, Chapters 8 and 10 Study your notes from the microbe minutes. Make tables that allow you to compare specific features of the microbes (aka, Gram + vs. Gram -, spore former versus non, flagella versus none, pathogenic versus non, morphology so bacterial shape, cocci, rods etc.) Chapter 6 1-Understand the importance for chemoorganohetrotrophic funneling substrates towards the same metabolic pathways 2-What ways can cells use to get energy? 3-Understand amphibolic pathways 4-Difference between aerobic and anaerobic respiration, and fermentation – which pathway produces the most energy and why 5-Embden-Meyerhof pathway: what is it? where does it occur in prokaryotes and eukaryotes? 6-Know start and ends products of glycolysis, where energy is invested. where energy is generated -What happens to the carbon -Know how many ATP and NADH generated -What is the difference between substrate level phosphorylation and oxidative phosphorylation? 7-What happens during transition/prep step (pyruvate dehydrogenase) 8-TCA cycle: where it occurs in both eukaryotes and prokaryotes, how many NADH, FADH 2 , CO 2 , and GTP are generated. Point of regulation (isocitrate dehydrogenase) 9-Concept of redox potential and how the redox potential of a conjugate pair (either – or +) determine how electrons will flow 10-General concept of how the ETC works and how movement of electrons leads to generation of PMF and in turn ATP generation 11-ETC: oxidative phosphorylation, why so much more ATP generated from ETC than glycolysis and TCA – Chemiosmotic hypothesis 12-Differences in bacterial ETCs compared to eukaryote and archaea: how ATP yield compares and why 13-ATP synthase how it works to generate ATP 14-Anaerobic respiration compared to aerobic: differences, why less ATP generated 15-Fermentation: importance, under what circumstances it occurs and how does energy generated compare to aerobic and anaerobic respiration 16-General types of fermentation: heterolactic acid vs. homolactic acid (differences between the two) vs alcoholic fermentation vs. mixed acid 17-Chemolithotrophy – why less ATP generated 18-General knowledge of metabolism of non-glucose carbon sources 19-Phototrophy 20-Anabolism 21-Precursor metabolites
Chapter 8 DNA-what it is, what it looks like, generally how it is packaged Relationship between DNA, RNA protein Griffith’s experiment Avery, MacLeod, and McCarty experiment Hershey Chase experiment Replication in detail-initiation, elongation, termination -importance of specific proteins in initiation (DnaA, B, C, G, gyrase, SSBs) -importance of Okazaki fragments -DNA polymerase -DNA ligase -ter sites/tus -telomeres and telomerase in Eukaryotes Gene structure Bacteria vs. Eukarya Differences between RNA and DNA Transcription in detail-initiation, elongation, termination -Promoters -Pribnow box (-10) and -35 region -RNA polymerase -Sigma factor -Core enzyme -rho -hairpin loops -Eukaryotic post transcriptional processing Shine Delgarno sequence Degeneracy of Code Wobble tRNA characteristic structure Amino Acid activation Translation in detail-initiation, elongation, termination Protein folding processing transport Differences between eukaryotes and prokaryotes in relation to aspects of transcription and translation Chapter 10 Mutations-every type we talked about and possible effects (general) Repair system-every type we talked about/think about differences between each system Carcinogenicity testing Screening/selection (positive and negative) SOS response HGT mechanisms (conjugation, transformation, transduction in detail) Homologous recombination (reciprocal and non) Transposons Don’t forget about guest speaker lecture and paper