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General Biology II - Caminalcules and Phylogenies | BI 102, Lab Reports of Biology

Material Type: Lab; Class: General Biology II; Subject: Biology; University: Central Oregon Community College; Term: Unknown 1989;

Typology: Lab Reports

Pre 2010

Uploaded on 08/18/2009

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Caminalcules and Phylogenies
Objectives
Understand the purpose of a phylogeny.
Learn what characteristics are useful in building a phylogeny
Construct a phylogeny for a fictitious set of organisms: caminalcules
Caminalcules & Constructing a Phylogeny
A phylogeny is a ‘family’ tree linking species together based on their historical relationships.
This is similar to a family tree that links parents to children. One difference is that one species
can give rise to two daughter species rather than two parents giving rise to an offspring.
Therefore the tree begins with the single most ancestral stock and typically branches as new
species evolve.
To give you the opportunity to construct a phylogeny (without requiring you to dedicate the next
decade of your life to the task), you are provided with hypothetical creatures, both living and
fossilized, called Caminalcules. These creatures can be arranged in a phylogenetic tree based on
the characteristics of each Caminalcule. In other words, your task today will be to arrange the 14
‘living’ species into a phylogenetic tree of Caminalcules. The goal here is to build a phylogenetic
tree based on homologous characters. The trick of course, is to decide what are homologous
characters and what are analogous characters.
So what constitutes a shared homologous character? This is a characteristic shared between two
or more species because the characteristic was present in a common ancestor and then passed on
to the descendant species. An analogous character, however, can lead to false trees. If two or
more species shared a characteristic that was not derived from a common ancestor, the species
may be linked together much more closely on the tree than they would have if that character was
ignored.
For your assignment today, you are to construct a phylogeny for the living caminalcules (the ones
with no number in parentheses). In your group, discuss what characteristics you think seem most
ancestral and which seem to have evolved much later in time. Use characteristics that allow you
to decide which caminalcule species is the most ancestral (that is has changed little from the
original ancestor) and build a phylogenetic tree that includes all 14 living species. It is important
to keep track of what characters you used to decide how to build the tree.
CAMINALCULES
Modified from Robert P. Gendron
Indiana University of Pennsylvania
Caminalcules are imaginary animals invented by the evolutionary biologist Joseph Camin. They
make ideal organisms for introducing students to phylogeny. These organisms illustrate how
modern classification schemes attempt to reflect evolutionary history. In the process of doing this
exercise, students are also introduced to concepts such as convergent evolution and vestigial
structures. The pictures of the Caminalcules are copyrighted by the journal Systematic Biology
and Robert R. Sokal. They are made available here with permission.
The Classification and Evolution of Artificial Organisms
Bi102 Caminalcules I 1
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Caminalcules and Phylogenies

Objectives

 Understand the purpose of a phylogeny.  Learn what characteristics are useful in building a phylogeny  Construct a phylogeny for a fictitious set of organisms: caminalcules

Caminalcules & Constructing a Phylogeny

A phylogeny is a ‘family’ tree linking species together based on their historical relationships. This is similar to a family tree that links parents to children. One difference is that one species can give rise to two daughter species rather than two parents giving rise to an offspring. Therefore the tree begins with the single most ancestral stock and typically branches as new species evolve. To give you the opportunity to construct a phylogeny (without requiring you to dedicate the next decade of your life to the task), you are provided with hypothetical creatures, both living and fossilized, called Caminalcules. These creatures can be arranged in a phylogenetic tree based on the characteristics of each Caminalcule. In other words, your task today will be to arrange the 14 ‘living’ species into a phylogenetic tree of Caminalcules. The goal here is to build a phylogenetic tree based on homologous characters. The trick of course, is to decide what are homologous characters and what are analogous characters. So what constitutes a shared homologous character? This is a characteristic shared between two or more species because the characteristic was present in a common ancestor and then passed on to the descendant species. An analogous character, however, can lead to false trees. If two or more species shared a characteristic that was not derived from a common ancestor, the species may be linked together much more closely on the tree than they would have if that character was ignored. For your assignment today, you are to construct a phylogeny for the living caminalcules (the ones with no number in parentheses). In your group, discuss what characteristics you think seem most ancestral and which seem to have evolved much later in time. Use characteristics that allow you to decide which caminalcule species is the most ancestral (that is has changed little from the original ancestor) and build a phylogenetic tree that includes all 14 living species. It is important to keep track of what characters you used to decide how to build the tree.

CAMINALCULES

Modified from Robert P. Gendron Indiana University of Pennsylvania Caminalcules are imaginary animals invented by the evolutionary biologist Joseph Camin. They make ideal organisms for introducing students to phylogeny. These organisms illustrate how modern classification schemes attempt to reflect evolutionary history. In the process of doing this exercise, students are also introduced to concepts such as convergent evolution and vestigial structures. The pictures of the Caminalcules are copyrighted by the journal Systematic Biology and Robert R. Sokal. They are made available here with permission.

The Classification and Evolution of Artificial Organisms

In this lab you will develop a phylogenetic tree for a group of imaginary organisms called Caminalcules after the taxonomist Joseph Camin who devised them. At the end of this section are pictures of the 14 "living" species that you will use. Look at the pictures and note the variety of appendages, shell shape, shading pattern, etc. A number rather than a name identifies each species. Exercises with artificial organisms are used so that you will approach the task with no preconceived notion as to how they should be classified. This means that you will have to deal with problems such as convergent evolution just as a systematic biologist would. With real organisms you would probably already have a pretty good idea of how they should be classified and thus miss some of the benefit of the exercise. To begin, note what characters are shared by which organisms. The more characters that are shared, the more likely these species share a recent common ancestor.

The Comparative Approach to Phylogenetic Analysis

Construct a phylogenetic tree based on your examination of the 14 living species. For example, let’s say you have put species A and G into the same

genus because you think they evolved from a common ancestor ( x ). Their

part of the tree would look like the diagram on the right.

When there are three or more species in a genus you must decide which two of the

species share a common ancestor not shared by the others. This

diagram indicates that species E and K are more closely related to

each other than either is to C. It is hypothesized that E and K have a

common ancestor y that is not shared by C. Similarly, two genera that

more closely resemble each other than they do other genera presumably share a common ancestor. Thus, even in the absence of a fossil record it is possible to develop a phylogenetic tree. One can even infer what a common ancestor like y might have looked like.

Hints, Suggestions and Warnings

a. Draw lines faintly in pencil to indicate the path of evolution. Only after your instructor has checked your tree should you place the figures on the page and darken the lines. b. Branching should involve only two lines at a time: Like this Not this c. All 14 living species should go across the top of the page. d. The Caminalcules were numbered at random; the numbers provide no clues to evolutionary relationships.

A G

x

E K C

y

z