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Laboratory Techniques and Bacterial Identification in Microbiology, Cheat Sheet of Pharmaceutical Microbiology

Detailed instructions for various laboratory techniques used in microbiology, including aseptic techniques, loop inoculation, broth-to-broth transfer, streak plate technique, and the use of selective and differential media. It also covers important definitions related to microbiology and provides information about the bacteria that may be manipulated in the lab, such as escherichia coli, staphylococcus epidermidis, pseudomonas aeruginosa, and enterobacter aerogenes.

Typology: Cheat Sheet

2023/2024

Uploaded on 02/26/2024

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WEEK 3 BIO 253L Drs. Hengartner & Vega
Finish Last Week's Exercise (Simple Stains: Positive and Negative Stains & Differential and
Special Stains)
If you ran out of time last week, examine the stained slides you prepared and record observations
about cell shape, arrangement, and color.
Pure Culture and Aseptic Technique
The two goals of aseptic (or sterile) techniques:
1) Safety: prevent the microbes you are working with from contaminating you, the
environment, or others.
2) The experiment: prevent contamination of your culture with unwanted organisms from
the environment
Note: The meaning of the words aseptic and sterile are slightly different, but both words are used
to describe the techniques you are learning today. See word definitions below.
Loop Inoculation
Loop inoculation and tube handling basics: Fundamental microbiology lab skills you need to
master.
1. Hold loop like pencil, flame loop starting at base and slowly move toward the end (make
sure all heated parts
become a uniform red-
orange). Allow wire to
cool for a few seconds
2. Remove tube cap with the
little finger of the hand
holding loop
3. Briefly flame tube lip by
passing through flames
4. Harvest sample, take care
loop does not touch lip of
the tube on way in or out
(a bit of broth should
remain trapped in loop)
5. Flame tube lip again, place
cap, set tube down
6. You can now inoculate a
fresh media (transfer the
inoculum to fresh media to
start a culture)
a. If inoculating a
liquid media or agar slant in a tube, open tube as described above, flame lip, and
insert loop without touching the lip of the tube, flame lip again, cap tube. After
inoculating broth tubes, touch the loop tip to side of glass to remove liquid
trapped in loop (this prevents aerosol effect when you flame the loop afterwards).
Avoid touching the loop to the lip of the tube.
b. If inoculating an agar plate, tilt lid of plate open, using it as a shield to minimize
airborne contaminants falling in. Use zig-zag pattern to spread bacteria from
loop onto plate.
7. Always flame loop after inoculation to avoid contamination of the work space.
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Finish Last Week's Exercise (Simple Stains: Positive and Negative Stains & Differential and Special Stains) If you ran out of time last week, examine the stained slides you prepared and record observations about cell shape, arrangement, and color.

Pure Culture and Aseptic Technique

The two goals of aseptic (or sterile ) techniques: **1) Safety: prevent the microbes you are working with from contaminating you, the environment, or others.

  1. The experiment: prevent contamination of your culture with unwanted organisms from the environment** Note: The meaning of the words aseptic and sterile are slightly different, but both words are used to describe the techniques you are learning today. See word definitions below. Loop Inoculation Loop inoculation and tube handling basics : Fundamental microbiology lab skills you need to master.
  1. Hold loop like pencil, flame loop starting at base and slowly move toward the end (make sure all heated parts become a uniform red- orange). Allow wire to cool for a few seconds
  2. Remove tube cap with the little finger of the hand holding loop
  3. Briefly flame tube lip by passing through flames
  4. Harvest sample, take care loop does not touch lip of the tube on way in or out (a bit of broth should remain trapped in loop)
  5. Flame tube lip again, place cap, set tube down
  6. You can now inoculate a fresh media (transfer the inoculum to fresh media to start a culture) a. If inoculating a liquid media or agar slant in a tube , open tube as described above, flame lip, and insert loop without touching the lip of the tube, flame lip again, cap tube. After inoculating broth tubes, touch the loop tip to side of glass to remove liquid trapped in loop (this prevents aerosol effect when you flame the loop afterwards). Avoid touching the loop to the lip of the tube. b. If inoculating an agar plate , tilt lid of plate open, using it as a shield to minimize airborne contaminants falling in. Use zig-zag pattern to spread bacteria from loop onto plate.
  7. Always flame loop after inoculation to avoid contamination of the work space.

Practice aseptic broth-to-broth transfer with inoculating loop Inoculation by Liquid Transfer You will be trained to use the micopipettors. Isolation of Colonies by Streak Plate Technique The goal of this exercise is to isolate single colonies by performing the 4-way streak plate technique (See figure on next page.). The colonies obtained by this technique can be used to start pure cultures of bacteria. Practice streak plate technique :

  1. Obtain a mixed culture
  2. Obtain two TSA plates, and label each plates with your initials and date.  TSA plates : Trypticase Soy Agar plates.
  3. Aseptically transfer a bit of culture from broth to TSA plate, deposit drop
  4. Perform 4-way streak plate technique (see instructor demo and figure below).

EMB (Eosin Methylene Blue) Agar: Selective medium that permits growth of Gram-negative enteric rods. The dyes eosin Y and methylene blue inhibit growth of Gram-positive bacteria. Differential medium that makes organisms that ferment lactose produce purple colonies and those that cannot, produce white or light pink colonies.  Lactose-fermenting colonies will reduce pH, pH indicator dyes (eosin Y and methylene blue) turn a dark color (purple)a  Non-lactose fermenting colonies will appear lighter color (very light pink or white) as the pH indicator dyes respond to neutral or lightly alkaline conditions  Escherichia coli produces such large amount of acid (very low pH) from lactose fermentation that the methylene blue dye in the medium precipitates into crystals to give colonies a metallic green sheen. Glucose Mineral Salts Agar (GMSA): Chemically defined medium. Only supports growth of bacteria that can synthesize all their cellular components from only glucose and inorganic salts ( non-fasitidious ). Distinguishes fastidious from non-fastidious organisms. Staphylococci are fastidious and will not grow on this medium. Trypticase Soy Agar: Rich, complex medium (enzymatic digests of casein (milk protein) and soybean meal). Supports growth of microorganisms that require many vitamins and growth factors. All of the species streaked should grow. About the bacteria you might manipulate todayEscherichia coli : Gram-negative bacteria shaped as short rod, commonly found in lower intestines of warm-blooded animals. Some strains are pathogenic. ( coli = in colon).  Staphylococcus epidermidis : Gram-positive coccus, part of the normal human skin flora, usually non-pathogenic (epidermidis = on epidermis).  Pseudomonas aeruginosa : Gram-negative rod, found in soil, water, plants and animals. Acts as an opportunistic pathogen that is found in nosocomial infections (because it colonizes medical devices), and infection of burn wounds. Growth on solid media may show a greenish color because of the pigments produced by the bacteria. Can also cause disease in plants.  Enterobacter aerogenes : Gram-negative rod that acts as an opportunistic pathogen, and is frequently found in nosocomial infections.

Opportunistic pathogen : Organism that is part of the normal flora and only causes disease when the host resistance is lowered. Nosocomial infections : Infections acquired in the hospital or clinic.