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MB ASCP EXAM 1 with Comprehensive Questions and Answers
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3' Exonuclease Activity ✓Proofreading-remove misincorporated nucleotide by breaking the phosphodiester bond and replace it with the correct one. 5' Exonuclease Activity ✓Used to remove nucleotides when DNA pol III encounters a nick, or discontinuity, thus moving the nick forward in an activity called nick translation. Once the polymerase is dislodged, ligase can close the DNA Colicinogenic Factors ✓Carry resistance to bacteriocin, toxic proteins manufactured by bacteria. Conjugation ✓DNA moves cell to cell through physical contact. Bacteria are of two sexes, F- and F+. F+ has a fertility factor that is responsible for establishing a physical connection between mating bacteria. Crossing Over ✓Physical exchange of molecules, how recombination occurs. DNA Methyltransferase ✓Catalyze the addition of methyl groups to nitrogen bases, usually adenines and cytosines in DNA strands. DNA Polymerase Alpha ✓Found in eukaryotes, involved in initiation of DNA replication. DNA Polymerase Beta ✓Found in eukaryotes, performs base excision repair required for DNA maintenance and replication. DNA Polymerase Gamma ✓The only polymerase found in mitochondria
DNA replication is conservative or semi-conservative? ✓Semi-conservative Double-stranded break ✓Occurs when a restriction enzyme cuts the duplex with a staggered separation at the recognition site, leaving 2- base ss overhangs ("sticky ends," because they they may bond with complementary ends of other DNA fragments) Endonuclease ✓Breaks the phosphodiester bonds in nucleic acids within the polymer chains, rather than from the ends. Ex restriction enzyme Exonuclease ✓Digests phosphodiester bonds from the ends of nucleic acid molecules Gyrase ✓A topoisomerase that releives strain while DNA is being unwound by helicase, causing negative supercoiling. AKA DNA topoisomerase II. Helicase ✓Separates the two strands of DNA Hemimethylated ✓Methylated on one strand of double helix but not the other. (Most prokaryotic DNA is methylated. Holoenzyme ✓A multisubunit protein with enzymatic function. Ex DNA pol III Hybridization ✓The formation of hydrogen bonds between complementary strands of DNA. If a plasmid is digested with an enzyme and 3 bands are formed on gel electrophoresis, how many enzyme cut sites are present on the plasmid? ✓3 sites
Recombinant DNA technology ✓Controlled mixing of genes Recombination ✓The mixture and assembly of new genetic combinations Resistance Transfer Factors (RTF), R factors ✓Plasmids carrying the genes for inactivation of antibiotic action >> Resistant bacteria. Promote resistance to antibiotics such as chloramphenicol, tetracycline, streptomycin. Self-transmissible Plasmid ✓A plasmid that carriers genes for its own transfer and propagation. Terminal Transferase ✓A DNA pol that can synthesize polynucleotide chains without a template Topoisomerase ✓Unwinds nucleic acids, relieving stress/tension on the double helix by breaking and re-attaching phosphodiester bonds. Tranduction ✓DNA moves cell to cell through intermediary viruses or bacteriophages Transformation ✓Unprotected DNA moves from cell to cell without physical contact or viral carriers Type I Restriction Enzyme ✓Restriction and modification (methylate) enzyme that cuts DNA at random far from their recognition sites. Little practical value. Type II Restriction Enzyme ✓cuts DNA at defined positions close to or within their recognition sequences. Ex Hhal, HindIII, Notl
Type III Restriction Enzyme ✓Similar to Type I, yet thely require two such sequences in opposite orientations within the same DNA molecule to accomplish cleavage; they rarely give complete digests. Type IV Restriction Enzyme ✓Recognize modified, typically methylated DNA What is the complementary sequence to 5'AGGTCA3'? ✓5'TGACCT3' What is the function of DNA? ✓Store genetic information What is the lagging strand in DNA synthesis? ✓The strand positioned 5' to 3' with respect to the direction of synthesis, requiring the replication assembly to jump ahead and read 3' to 5' back toward the moving replication fork. The leading strand is read continuously 3' to 5'. What type of enzyme could turn a sticky end into a blunt end? ✓A single strand exonuclease can digest the overhand, forming a blunt end. Alternatively, a polymerase could fill in the overhang to make a blunt end Which of the ribose carbons participate in the phosphodiester bond? ✓The 5' ribose carbon carries the phosphate group that forms a phosphodiester bond with the hydroxyl group on the 3' ribose carbon. Which ribose carbon carries the nitrogen base? ✓The 1' carbon Why does DNA polymerase require primase activity? ✓DNA polymerase cannot begin synthesis without a 3' OH group (thus DNA is read 3' to 5' to synthesize new DNA)