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A study guide for the first lab practical exam on microbial survey. It includes information on identifying microorganisms, characteristics of eukaryotes and prokaryotes, the normal microbiome of humans, media used in the lab for culturing bacteria, and biosafety levels. The guide also covers laboratory rules, regulations, and proper procedures.
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MICROBIAL SURVEY Be able to identify required prepared slides = the list written on the board and Handout-Lab2-3-Survey Microorganisms. These included microscopic: algae, diatoms, desmids, cyanobacteria, bacteria, animals, fungi and protozoa. etc.... ● Know the characteristics of Eukaryotes and Prokaryotes. Know all the characteristics of chart for Protozoa, Algae, and Bacteria ○ Prokaryotes ■ Small and simple ■ 0.1 to 5.0 μm in size ■ Unicellular ■ Nucleus is absent ■ Single haploid chromosome ■ Lack membrane bound organelles ■ Reproduce both sexually and asexually ■ Cell division by binary fission ■ Examples: bacteria and archaea cells ○ Eukaryotes ■ Large and complex ■ 10 to 100 μm in size ■ Unicelluar or multicellular ■ Nucleus is present ■ Linear DNA ■ Paried diplod chromosomes ■ Has membrane bound organelles ■ Mostly reproduce sexually ■ Cell division mitosis ■ Examples: plant/animal cells, including humans ● Know what percentage of organisms that are pathogens OR helpful, beneficial, or not harmful. ○ 99% ● Know all the structures microorganisms use for motility. What’s the normal microbiome of human? ● Fungi (molds and yeasts) grow on Sabouraud’s Dextrose Agar (SDA). Why do fungi grow better on SDA than TSA or NA (nutrient agar)?
★ SDA is selective for fungus because of its low pH and its ability to incubate at room temperature. TSA is just general and anything can grow on it. DEFINE characteristics of Fungi , especially the molds and yeasts seen in the lab. ★ Fungi are eukaryotic, heterotrophic, lack tissue differentiation, have cell walls, propagate by spores. Fungi: molds - Be able to identify required prepared slides of fungi (Prepared slides – what are the structures – which also help us identify the species) Penicillium, Aspergillus, Rhizopus Penicillium
○ Clothespin - hold slide ○ Test tube ○ Test tube rack ○ Petri dish ■ TSA plate ■ TSB plate ■ SDA plate ○ Slides and slide covers ○ Pipette ● Wet mount: how to make one correctly with no air bubbles. (be able to demonstrate and write a step by step description.) ○ Get a clean slide ○ Get samples from bottom of bottle using pipette. ○ Put one drop on the slide ○ Put cover slip on at an angle to avoid bubbles. ● Be able to distinguish macroscopically (macro-inspection) the following colony types in a Petri dish: mold, yeast, bacteria; counts; growth or no growth ○ Source: Cellphone ○ Source: Bottom of shoe
○ Source: Cough (from from lab partner and Me) ● Know the different types of media used in the lab for culturing bacteria and what are their properties: i.e. tryptic soy agar (TSA) or nutrient agar (NA – not used so far), both general purpose media. SDA a special purpose medium. Blood agar and tryptic soy broth were also media that was used. Be able to read the media and source from bottom of plates ○ Both- General, anything grows on it. ● Bacteria: concept of clones and colonies (e.g. from your air or ubiquity plate – What does each visible colony come from?). That is referring to the theoretical concept that
● BSL Safety Agreement. Be able to define the different Biosafety Levels and abbreviations (BSL) ○ BSL-1 labs are used to study infectious agents or toxins not known to consistently cause disease in healthy adults. ■ They follow basic safety procedures, called Standard Microbiological Practices and require no special equipment or design features. ■ Standard engineering controls in BSL-1 laboratories include easily cleaned surfaces that are able to withstand the basic chemicals used in the laboratory. ○ BSL-2 laboratories are used to study moderate-risk infectious agents or toxins that pose a risk if accidentally inhaled, swallowed, or exposed to the skin. ■ Design requirements for BSL-2 laboratories include hand washing sinks, eye washing stations in case of accidents, and doors that close automatically and lock. ■ BSL-2 labs must also have access to equipment that can decontaminate laboratory waste, including an incinerator, an autoclave, and/or another method, depending on the biological risk assessment. ○ BSL-3 laboratories are used to study infectious agents or toxins that may be transmitted through the air and cause potentially lethal infection through inhalation exposure. ■ Researchers perform all experiments in biosafety cabinets that use carefully controlled air flow or sealed enclosures to prevent infection. ■ BSL-3 laboratories are designed to be easily decontaminated. These laboratories must use controlled, or “directional,” air flow to ensure that air flows from non-laboratory areas (such as the hallway) into laboratory areas as an additional safety measure. ○ BSL-4 laboratories are used to study infectious agents or toxins that pose a high risk of aerosol-transmitted laboratory infections and life-threatening disease for which no vaccine or therapy is available. ○ The laboratories incorporate all BSL 3 features and occupy safe, isolated zones within a larger building or may be housed in a separate, dedicated building. Access to BSL-4 laboratories is carefully controlled and requires significant training.