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Mutation and Genetic Code, Assignments of Genetics

Various types of mutations and their effects on DNA, mRNA, and amino acid sequences. It also explains the genetic code and the consequences of adding or losing nucleotides. examples and questions to test understanding.

Typology: Assignments

2022/2023

Available from 07/20/2023

CinderIsStudying
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BIO208 Mutation
1. 5’A C G G T C T C G G G A C T T C G A T C G 3’
A point mutation occurs when a G is substituted with a T as shown in bold.
DNA: 5’A C G T T C T C G G G A C T T C G A T C G 3’
Template 3’ 5’
U G C A A G A G C C C U G A A C C U A G C
mRNA: 5’ 3’
Amino
Acids: Cys Lys Ser Pro Glu Pro Ser
a. Fill in the template DNA for the mutated DNA
b. Fill in the mRNA transcribed from the DNA template that has the mutation
c. Translate the mRNA (codon table below)
d. What is the mutation type? (silent, missense, frameshift, nonsense)
missense mutation
e. How would you characterize this change? (example: third position transition)
First position
2. An insertion occurred between the fifth and sixth codons when two new nucleotides were inserted.
Original DNA: 5’ A C G G T C T C G G G A C T T C G A T C G 3’
Mutant DNA: 5’ A C G G T C T C G G G A C T T G C C G A T C G 3’
Template 3’ T G C C A G A G C C C T G A A C G G C T A G C 5’
mRNA 5’ A C G G U C U G G G A C U U G C C G A U C G 3’
Amino Thr Val Trp Asp Leu Pro Lle
Acids:
a. Fill in the template DNA for the mutant DNA
b. Transcribe the mutant DNA template to mRNA
c. Translate the mRNA to an amino acid sequence using the codon table
d. How would you characterize this change? (example: third position transition)
First position
e. Is this an example of a silent, nonsense, missense, or frameshift mutation?
frameshift mutation
3. The genetic code is a triplet code. What effect would the addition or loss of six
nucleotides have on the reading frame? Explain.
The loss or addition of six nucleotides would cause two amino acids to either be missing or
added in. This would cause the reading frame to still be read corrected for all the rest of the amino acids.
4. The mRNA transcript is 102 nucleotides long. A frameshift mutation occurs at the 85th nucleotide. How
many amino acids will be correct?
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BIO208 Mutation

1. 5’A C G G T C T C G G G A C T T C G A T C G 3’

A point mutation occurs when a G is substituted with a T as shown in bold.

DNA: 5’A C G T T C T C G G G A C T T C G A T C G 3’

Template 3’ 5’ U G C A A G A G C C C U G A A C C U A G C mRNA: 5’ 3’ Amino Acids: Cys Lys Ser Pro Glu Pro Ser a. Fill in the template DNA for the mutated DNA b. Fill in the mRNA transcribed from the DNA template that has the mutation c. Translate the mRNA (codon table below) d. What is the mutation type? (silent, missense, frameshift, nonsense) missense mutation e. How would you characterize this change? (example: third position transition) First position

  1. An insertion occurred between the fifth and sixth codons when two new nucleotides were inserted.

Original DNA: 5’ A C G G T C T C G G G A C T T C G A T C G 3’

Mutant DNA: 5’ A C G G T C T C G G G A C T T G C C G A T C G 3’

Template 3’ T G C C A G A G C C C T G A A C G G C T A G C 5’ mRNA 5’ A C G G U C U G G G A C U U G C C G A U C G 3’ Amino Thr Val Trp Asp Leu Pro Lle Acids: a. Fill in the template DNA for the mutant DNA b. Transcribe the mutant DNA template to mRNA c. Translate the mRNA to an amino acid sequence using the codon table d. How would you characterize this change? (example: third position transition) First position e. Is this an example of a silent, nonsense, missense, or frameshift mutation? frameshift mutation

  1. The genetic code is a triplet code. What effect would the addition or loss of six nucleotides have on the reading frame? Explain. The loss or addition of six nucleotides would cause two amino acids to either be missing or added in. This would cause the reading frame to still be read corrected for all the rest of the amino acids.
  2. The mRNA transcript is 102 nucleotides long. A frameshift mutation occurs at the 85th nucleotide. How many amino acids will be correct?
  1. The mRNA transcript is 102 nucleotides long. A nonsense mutation occurs at the 45th nucleotide. How many amino acids long is this mutant protein? 45
  2. How does a silent mutation differ from a neutral mutation? Provide one example of a silent mutation (include the nucleotides involved). A silent mutation changes the nucleotide, but it ends up coding for the same amino acid. A neutral mutation occurs when the change in amino acid does not end up affecting the protein’s function. An example of a silent mutation would be if the original amino acid was UCU and was changed for UCC. These both code for Ser, so the protein ends up not being affected.
  3. You are studying a gene in E. coli that codes for a protein. A part of its sequence is:
    • Ala - Pro - Trp - Ile - Gln - Lys - Cys - His - You recover a series of mutants for this gene that show no enzymatic activity. By isolating the mutant enzyme products, you find the following protein sequences: Mutant 1: - Ala - Pro - Mutant 2: - Ala - Pro - Trp - Lys - Gln - Lys - Cys - His - Mutant 3: - Ala - Pro - Gly - Tyr - Arg - Ser - Ala - Met - a. Compare Mutant 1 to the normal protein. What specific point mutation (show nucleotides in mRNA) occurred to the codon that encoded Trp for this to occur? Consult the codon table. The nucleotides that code for Trp is UGG, so the last G was swapped for an A, resulting in a stop codon and a nonsense mutation. b. Compare Mutant 2 to the normal protein. What specific point mutation (show nucleotides in mRNA) occurred to cause the Ile to become Lys? The U nucleotide from the Ile amino acid was swapped out for an A, and ends up coding for Lys. c. Challenge question: Compare Mutant 3 to the normal protein. ONE point mutation occurred to cause the mutant protein. Identify the specific point mutation. The U in Trp was swapped for a G.