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Organic Chemistry I Review Cheat Sheet, Cheat Sheet of Organic Chemistry

Highlights of Key Reactions, Mechanisms, and Principles of Organic Chemistry

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Organic Chemistry I Review: Highlights of Key Reactions, Mechanisms, and Principles
1
Some Arrow-Pushing Guidelines (Section 1.14)
1. Arrows follow electron movement.
2. Some rules for the appearance of arrows
The arrow must begin from the electron source. There are two sources:
a. An atom (which must have a lone pair to give)
b. A bond pair (an old bond that breaks)
An arrow must always point directly to an atom, because when electrons move, they
always go to some new atom.
3. Ignore any Spectator Atoms. Any metal atom is always a “spectator”
When you have a metal spectator atom, realize that the non-metal next to it must have
negative charge
4. Draw all H’s on any Atom Whose Bonding Changes
5. Draw all lone-pairs on any Atom whose bonding changes
6. KEY ON BOND CHANGES. Any two-electron bond that changes (either made or
broken) must have an arrow to illustrate:
where it came from (new bond made) or
an arrow showing where it goes to (old bond broken)
7. Watch for Formal Charges and Changes in Formal Charge
If an atom’s charge gets more positive Þ it’s donating/losing an electron pair Þ arrow
must emanate from that atom or one of it’s associated bonds. There are two “more
positive” transactions:
When an anion becomes neutral. In this case, an arrow will emanate from the
atom. The atom has donated a lone pair which becomes a bond pair.
When a neutral atom becomes cationic. In this case, the atom will be losing a
bond pair, so the arrow should emanate from the bond rather than from the atom.
If an atom’s charge gets more negative Þ it’s accepting an electron pair Þ an arrow must
point to that atom. Ordinarily the arrow will have started from a bond and will point to
the atom.
8. When bonds change, but Formal Charge Doesn’t Change, A “Substitution” is Involved
Often an atom gives up an old bond and replaces it with a new bond. This is
“substitution”.
In this case, there will be an incoming arrow pointing directly at the atom (to illustrate
formation of the new bond), and an outgoing arrow emanating from the old bond that
breaks
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Some Arrow-Pushing Guidelines (Section 1.14)

1. Arrows follow electron movement.

2. Some rules for the appearance of arrows

  • The arrow must begin from the electron source. There are two sources:

a. An atom (which must have a lone pair to give)

b. A bond pair (an old bond that breaks)

  • An arrow must always point directly to an atom, because when electrons move, they

always go to some new atom.

3. Ignore any Spectator Atoms. Any metal atom is always a “spectator”

  • When you have a metal spectator atom, realize that the non-metal next to it must have

negative charge

4. Draw all H’s on any Atom Whose Bonding Changes

5. Draw all lone-pairs on any Atom whose bonding changes

6. KEY ON BOND CHANGES. Any two-electron bond that changes (either made or

broken) must have an arrow to illustrate:

  • where it came from (new bond made) or
  • an arrow showing where it goes to (old bond broken)

7. Watch for Formal Charges and Changes in Formal Charge

  • If an atom’s charge gets more positive Þ it’s donating/losing an electron pair Þ arrow

must emanate from that atom or one of it’s associated bonds. There are two “more

positive” transactions:

  • When an anion becomes neutral. In this case, an arrow will emanate from the

atom. The atom has donated a lone pair which becomes a bond pair.

  • When a neutral atom becomes cationic. In this case, the atom will be losing a

bond pair, so the arrow should emanate from the bond rather than from the atom.

  • If an atom’s charge gets more negative Þ it’s accepting an electron pair Þ an arrow must

point to that atom. Ordinarily the arrow will have started from a bond and will point to

the atom.

8. When bonds change, but Formal Charge Doesn’t Change, A “Substitution” is Involved

  • Often an atom gives up an old bond and replaces it with a new bond. This is

“substitution”.

  • In this case, there will be an incoming arrow pointing directly at the atom (to illustrate

formation of the new bond), and an outgoing arrow emanating from the old bond that

breaks

4.16 Reactive Intermediates: Stability Patterns

  • Shortlived, unstable, highly reactive intermediates
  • Normally lack normal bonding

These are tremendously important:

1. They will be the least stable intermediate in any multistep mechanism

2. When formed, they are products of the rate-determining step

3. Factors that stabilize them will speed up reaction rates

Thus it is very important to know their stability patterns!

Class Structure Stability Pattern

Carbocations Allylic > 3º > 2º > 1º > methyl > alkenyl

(vinyl, aryl)

Electron

Poor

Electrophilic/

Acidic

Carbon

Radicals

Allylic > 3º > 2º > 1º > methyl > alkenyl

(vinyl, aryl)

Electron

Poor

Electrophilic/

Acidic

Carbanions Allylic > alkenyl (vinyl, aryl) > methyl > 1º >

Electron

Rich

Nucleophilic/

Basic

Notes

1. Both carbocations and radicals have the same pattern. So you don’t need to memorize them

twice!

2. Carbanions are almost exactly the reverse, except that being allylic is ideal for both.

3. All benefit from resonance (allylic).

4. Cations and radicals both fall short of octet rule. As a result, they are both electron deficient.

Carbanions, by contrast, are electron rich.

5. Alkyl substituents are electron donors. As a result, they are good for electron deficient cations

and radicals (3º > 2º > 1º > methyl) but bad for carbanions.

6. Alkenyl (vinyl or aryl) carbons are inherently a bit electron poor. This is excellent for

carbanions, but terrible for cations or radicals.

C

C

C

2. Product Stability/Reactivity : The more stable the product, the more favorable its formation

will be. In terms of rates, this means that the more stable the product, the faster the reaction.

(The concept here is that the more stable the product, the more favorable it will be to make that

product.)

Key note: Often the “product” that’s relevant in this context will not be the final product of

the reaction, but will be the “product” of the rate determining step.

  • Acidity

Why: Because as the stability of the anion products increases from A to D, the reactivity of

the parent acids increase

  • Reactivity of alkanes toward radical halogenation

Why: Because as the stability of the radical produced during the rate-determining-step

increases, the reactivity of the parent alkane increases

  • S N

1, E1 Reactivity

Why: Because as the stability of the cation produced in the rate-determining step increases,

the reactivity of the parent halide increases as well

CH

3

NH

2 OH

OH

O

CH

2

Na NHNa

ONa

ONa

O

A

B

C

D

H

3

C

CH

3 < <

3 ° plus resonance

Br

Br

Br

Br

3 ° plus resonance

3. Transition-State Stability/Reactivity : The more stable the transition state, the faster the

reaction will be. (The concept here is that the lower the transition state, the more easily it will be

crossed.)

  • S N

2 Reactivity

Why: The pattern reflects the relative stability of the transition states. In the case of 3˚ versus 2˚ versus 1˚, the issue is

steric congestion in the transition state. The transition states for the more highly substituted halides are

destabilized. In the case of allylic halides, the transition state is stabilized for orbital reasons, not steric

reasons.

Br

Br

Br

Br

1° plus allylic

4. S

N

1 Reactions.

Recognition : A. Neutral, weak nucleophile. No anionic nucleophile/base, and

B. 3º or 2º alkyl halide. (Controlled by cation stability).

(1º alkyl halides undergo S

N

2 instead. For 2º alkyl halides, S

N

1 is often accompanied by

variable amounts of E1.)

Predicting product: Remove halide and replace it with the nucleophile (minus an H atom!)

Stereochemistry : Racemization. The achiral cation intermediate forgets any stereochem.

Mech : Stepwise, 3 steps, via carbocation. Be able to draw completely.

5. E1 Reactions. 3º > 2º > 1º (Controlled by cation stability)

Recognition : A. Neutral, weak nucleophile. No anionic nucleophile/base, and

B. 3º or 2º alkyl halide. (Controlled by cation stability).

(For 2º alkyl halides, E1 is often accompanied by variable amounts of S

N

Orientation : The most substituted alkene forms

Predicting the major product: Remove halide and a hydrogen from the neighboring carbon

that can give the most highly substituted alkene. The hydrogen on the neighboring carbon can

be cis or trans.

Stereochemistry : Not an issue. The eliminating hydrogen can be cis or trans..

Mech : Stepwise, 2 steps, via carbocation. Be able to draw completely.

Sorting among S

N

2, S

N

1, E2, E1: How do I predict?

Step 1: Check nucleophile/base.

  • If neutral , then S

N

1/E1  mixture of both

  • If anionic , then S

N

2/E2.

Step 2: If anionic , and in the S N

2/E2 , then Check the substrate.

o 1º  S

N

2

o 2º  S

N

2/E2 mixture. Often more S

N

2 , but not reliable…

o 3º  E

OCH

3 Br

S

N

1: resonance >3º>2º>1º> alkenyl

  • H Br

HOCH

3

OCH

3

H Br

HOCH

3

Br

Br

  • Br

slow

step

OCH

3

H

Br

E1: 3 º>2º>1º

HOCH

3

H

Br

H

H + H Br

Br

  • Br

slow

step

6.16 Comparing S N

2 vs S

N

1

S

N

1 S

N

2

1 Nucleophile Neutral, weak Anionic, strong

2 Substrate 3º R-X > 2º R-X 1º R-X > 2º R-X

Allylic effect… Allylic Helps Allylic helps

3 Leaving Group I > Br > Cl I > Br > Cl

4 Solvent Polar needed Non-factor

5 Rate Law K[RX] k[RX][Anion]

6 Stereochemistry

(on chiral, normally 2º R-X)

Racemization Inversion

7 Ions Cationic Anionic

8 Rearrangements Problem at times Never

6.21 Comparing E2 vs E

E1 E

1 Nucleophile/Base Neutral, weak, acidic Anionic, strong, basic

2 Substrate 3º R-X > 2º R-X 3 º RX > 2º RX > 1º RX

Allylic effect… Allylic Helps Non-factor

3 Leaving Group I > Br > Cl I > Br > Cl

4 Solvent Polar needed Non-factor

5 Rate Law K[RX] k[RX][Anion]

6 Stereochemistry Non-selective Trans requirement

7 Ions Cationic Anionic

8 Rearrangements Problem at times Never

9 Orientation Zaitsev’s Rule: Prefer

more substituted alkene

Zaitsev’s Rule: Prefer more

Substituted alkene (assuming

trans requirement permits)

Comparing S

N

2 vs S

N

1 vs E2 vs E1: How Do I Predict Which Happens When?

Step 1: Check nucleophile/base.

  • If neutral , then S

N

1/E1  mixture of both

  • If anionic , then S N

2/E2.

Step 2: If anionic , and in the S

N

2/E2 pool, then Check the substrate.

o 1º  S

N

o 2º  S

N

2/E2 mixture. Often more S

N

2 , but not reliable…

o 3º  E

Notes:

1º R-X S

N

2 only No E2 or S

N

1/E1 (cation too

lousy for S

N

1/E1; S

N

2 too fast

for E2 to compete)

3º R-X E2 (anionic) or

S

N

1/E1 (neutral/acidic)

No S

N

2 (sterics too lousy)

2º R-X mixtures common

Reaction Mechanisms (see p. 310)

A. Recognizing/Classifying as Radical, Cationic, or Anionic

1. Radical

 initiation requires both energy (either hv or Δ) and a weak, breakable heteroatom-heteroatom

bond

o Cl-Cl, Br-Br, O-O (peroxide), N-Br, etc..

2 Guides for That are Usually Reliable:

hv  radical mechanism

peroxides  radical mechanism

2. Anionic

 a strong anion/base appears in the recipe

 no strong acids should appear in the recipe

 mechanisms should involve anionic intermediates and reactants, not strongly cationic ones

  • (except for do-nothing spectators like metal cations)

 The first step in the mechanism will involve the strong anion/base that appears in the recipe

3. Cationic

 a strong acid/electrophile appears in the recipe

 no strong anion/base should appear in the recipe

 mechanisms should involve cationic intermediates and reactants, not strongly anionic ones

  • (except for do-nothing spectators like halide or hydrogen sulfate anions)

 The first step in the mechanism will involve the acid that appears in the recipe. The last step

will often involve a deprotonation step. Often the main step occurs in between the proton-

on and proton-off steps

B. Miscellaneous Mechanism Tips

1. Keep track of hydrogens on reacting carbons

2. Each step in a mechanism must balance

3. The types of intermediates involved (cation, anion, or radical) should be consistent with

the reaction classification above

a. If the reaction is cationic, don’t show anionic intermediates

b. If the reaction is anionic, don’t show cationic intermediates

4. Usually conditions are ionic.

5. Use a reactive species, whether strong anion or an acid, to start the first step

a. If acidic, first step will involve protonation of the organic

b. If anionic, the first step will involve the anion attacking the organic.

6. While it isn’t always easy to figure out what is a good mechanism, you should often be

able to eliminate an unreasonable mechanism.

Chapter 7 Reactions and Mechanisms, Review

E

On

R-X,

Normal

Base

Notes

1. Trans hydrogen required for E

2. Zaytsev elimination with normal bases

3. For 3º R-X, E2 only. But with 2º R-X, S

N

2 competes (and usually prevails)

4. Lots of “normal base” anions.

E2,

On

R-X, Bulky

Base

Notes:

1. Hoffman elimination with Bulky Bases

2. E2 dominates over S

N

2 for not only 3º R-X but also 2º R-X

3. Memorize NEt

3

and KOC(CH

3

3

as bulky bases.

Acid-

Catalyzed

E1-

Elimination

Of

Alcohols

Notes:

1. Zaytsev elimination

2. Cationic intermediate means 3º > 2º > 1º

3. 3 - Step mechanism

CH

3

Br

OCH

3

H

H H OCH

3

Br

NaOCH

3

H OCH

3

Mech:

  • Br

(Normal

base)

Br

NEt

3

or

KOC(CH

3

3

(Bulky

bases)

H

2

C

Mech: Br

H

NEt

3

  • Et

3

NH Br

OH

H

2

SO

4

+H OH

H

2

SO

4

+ HSO

4

+ OH

2

- H

2

O

HSO

4

+ H

2

SO

4

Protonation

Elimination

Deprotonation

OH

OH

2

H

H

H

Mech

Orientation Stereo Mechanism

None Trans Be able to

draw

completely

Markovnikov Trans Be able to

draw

completely

None Cis Not

responsible

None Trans

Be able to

draw

acid-

catalyzed

epoxide

hydrolysis

None Cis Not

responsible

None None Not

responsible

None None Not

responsible

Br

CH

3

H

Br

Br

2

(or Cl

2

OH

CH

3

H

Br

Br

2

, H

2

O

(or Cl

2

O

CH

3

H

PhCO

3

H

OH

CH

3

H

OH

CH

3

CO

3

H

H

2

O

OH

CH

3

OH

H

OsO

4

, H

2

O

2

O

H

H

O

1. O

3

  1. Me

2

S

Note: H-bearing alkene carbon

ends up as aldehyde.

O

H

OH

O

KMnO 4

H-bearing alkene carbon

ends as carboxylic acid

Summary of Mechanisms, Ch. 7 + 8.

Alkene Synthesis and Reactions.

Note: For unsymmetrical alkenes, protonation again occurs at the less substituted end of the

alkene, in order to produce the more stable radical intermediate (3º > 2º > 1º)

HBr Br

(no peroxides)

Br

H

H

H Br

H

H

  • Br

Br

Protonate

Cation

Capture

H

Note: For unsymmetrical alkenes,

protonation occurs at the less

substituted alkene carbon so that

the more stable cation forms

( 3 º > 2 º > 1 º), in keeping with the

product stability-reactivity principle

CH

3

H

H

vs.

H

CH

3

H

H

CH

3

Br

both cis and trans

HBr

peroxides

H

H

H

H

Br

Brominate Hydrogen

Transfer

Br

Br

H Br

Br

Note 1 : For unsymmetrical alkenes,

bromination occurs at the less

substituted alkene carbon so that

the more stable radical forms

( 3 º > 2 º > 1 º), in keeping with the

product stability-reactivity principle

Note 2 : Hydrogenation of

the radical comes from either

face, thus cis/trans

mixture results

CH

3

H

Br

vs.

H

CH

3

Br

H

Br

top

bottom

H

Br

H

Br

H

CH

3

CH

3

H

cis

trans

OH

CH

3

H

2

O, H

O

H

H

H

H

Protonate Cation

Capture

H

H

OH

2

H

H

- H

OH

H

H

Deprotonate

Ch. 15 Conjugated Systems

The General Stabilization Effect of Conjugation (Section 15.1, 2, 3, 8, 9)

Conjugated

(more stable)

Isolated

(less

stable)

Notes:

1 Cations

2 Radicals

3 Anions

4 Dienes

5 Ethers An N or O next to a double bond becomes

sp

2

. An isolated N or O is sp

3

6 Amines

7 Esters

8 Amides Very special, chapter 23, all of biochemistry,

proteins, enzymes, etc.

9 Oxyanions

(Carboxylates)

Very special, chapter 21

10 Carbanions

(Enolates)

Very special, chapter 22

11 Aromatics Very special, chapters 16 + 17

Conjugation: Anything that is or can be sp

2

hybridized is stabilized when next to π bonds.

  • oxygens, nitrogens, cations, radicals, and anions

Notes:

1. Any atom that can be sp

2

will be sp

2

when next to a double bond

2. “Conjugation” is when sp

2

centers are joined in an uninterrupted series of 3 or more, such that

an uninterrupted series of p-orbitals is possible

3. Any sp

2

center has one p orbital

O

sp

2

, not sp

3

O

sp

3

N

H

sp

2

H

N

sp

3

O

sp

2

O

O

O

sp

3

N

H

sp

2

O

H

N

sp

3

O

sp

2

O

O

O

O

sp

3

sp

2

O

sp

3

O

Impact of Conjugation

4. Stability: Conjugation is stabilizing because of p-orbital overlap (Sections 15.2, 4, 7)

  • Note: In the allyl family, resonance = conjugation

One p Two p’s Three p’s Four p’s Six p’s in circuit

Unstabilized

π-bond

Allyl type Butadiene type Aromatic

Isolated C=C

C=O

C=N

5. Reactivity: Conjugation-induced stability impacts reactivity (Sections 15.4-7)

  • If the product of a rate-determining step is stabilized, the reaction rate will go faster

(product stability-reactivity principle)

o Common when allylic cations, radicals, or carbanions are involved

  • If the reactant in the rate-determining step is stabilized, the reaction rate will go slower

(reactant stability-reactivity principle)

o Why aromatics are so much less reactive

o Why ester, amide, and acid carbonyls are less electrophilic than aldehydes or ketones

6. Molecular shape (Sections 15.3, 8, 9)

  • The p-orbitals must be aligned in parallel for max overlap and max stability
  • The sp

2

centers must be coplanar

7. Bond Length: Bonds that look like singles but are actually between conjugated sp

2

centers are

shorter than ordinary single bonds

  • In amides, esters, and acids, the bond between the carbonyl and the heteroatom is shortened

8. Bond Strength: Bonds that look like singles but are actually between conjugated sp

2

centers

are stronger than ordinary single bonds

O

O

O

O

NH

2

O

OH

O

OR

O

All four sp

2

carbons must be flat for the p's to align

O

NH

2

  1. 33 A

normal

double

  1. 54 A

normal

single

  1. 48 A = Shortened

and Strengthened

conjugated single

Shortened

and Strengthened

O

OH

O

OR

Shortened

and Strengthened

Shortened

and Strengthened

Impact of Allylic Cation Resonance on Reactivity and Product Formation

1. Rates : Resonance/conjugation stability enhances rates when cation formation is rate-

determining

2. Product Distribution: Product mixtures often result if an allylic cation is asymmetric.

  • The two different resonance structures can lead to different products.
  • When two isomeric products can form from an allylic cation, consider two things:

1. Which product is more stable?

  • This will impact “product stability control” = “thermodynamic control” =

“equilibrium control”

  • To assess product stability, focus on the alkene substitution

2. Which resonance form of the cation would have made a larger contribution?

  • This will often favor “kinetic control”, in which a product which may not ultimately

be the most stable forms preferentially

3. Position of Cation Formation : When a conjugated diene is protonated, consider which site of

protonation would give the best allylic cation.

Sections 15.5,6 1,2 vs. 1,4 Addition to Conjugated Dienes: “Kinetic” vs. “Thermodynamic”

Control

Note: “Thermodynamic Control” = “Product-Stability Control” = “Equilibrium Control”

 This is when the most stable of two possible products predominates. Either of two factors can

cause this:

o Transition State: The most stable product is formed fastest via the most stable

transition state (normally true, but not always)

o Equilibrium : Even if the most stable product is not formed fastest, if the two products

can equilibrate, then equilibrium will favor the most stable product

Kinetic Control: If the less stable of two possible products predominates.

 This will always require that for some reason the less stable product forms via a better transition

state (transition-state stability/reactivity principle). Common factors:

o Charge distribution in an allylic cation or radical. The position of charge in the major

resonance contributor may lead to one product, even though it may not give the most

stable product.

o Proximity of reactants. In an H-X addition to a diene, often the halide anion is closer to

one end of the allylic cation than the other, resulting in “1,2 addition” over “1,

addition”.

o Steric factors. With a bulky E2 base, for example, the transition state leading to what

would be the more stable Zaytsev alkene has steric problems, so it gives the Hoffman

alkene instead.

15.7 Allylic/Benzylic Radicals

Stability Factors for Radicals:

1. Isolated versus Conjugated/Allylic: Conjugation stabilizes

2. Substitution: More highly substituted are more stable.

  • Conjugation/allylic is more important than the substitution pattern of an isolated cation

Impact of Radical Resonance on Reactivity and Product Formation

1. Rates :

2. Product Distribution: Product mixtures often result if an allylic radical is asymmetric.

3. Position of Radical Formation

Section 15.10 S

N

2 on Allylic, Benzylic Systems Are Really Fast

Ex.

Why? Because the backside-attack transition-state is stabilized by conjugation!

(Transition state-stability-reactivity principle).

1. Neither the product nor the reactant has conjugation, so it’s hard to see why conjugation should

apply

2. However, in the 5-coordinate T-state the reactive carbon is sp

2

hybridized

 the nucleophile and the electrophile are essentially on opposite ends of a temporary p-orbital.

3. That transient sp

2

hybridization in the transition-state is stabilized by π-overlap with the adjacent

p-bond.

4. This stabilization of the transition-state lowers the activation barrier and greatly accelerates

reaction

Br H

NaOCH

3

H OCH

3

Br H

NaOCH

3

H OCH

3

Slow, and contaminated by competing E 2

Fast and Clean

15 min

10 hours

100 % yield

80 % yield

Br H

H

H

3

CO

Br

H OCH

3