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Understanding Drug Absorption: Lipophilicity and Partition Coefficients, Study notes of Molecular Structure

The concept of drug absorption through passive transport and the role of lipophilicity in this process. It discusses the partition coefficient, which measures a drug's affinity for water and organic solvents, and its impact on drug transport across cell membranes. Additionally, it covers weak acids and bases, their ionization in aqueous solutions, and the distribution coefficient, which reflects ph-dependent lipophilicity.

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2021/2022

Uploaded on 09/12/2022

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Partition and distribution coefficients
Absorption of drugs
There are a number of ways that drugs are absorbed,
1
but the most common route is passive
transport (diffusion). Passive transport does not require an input of energy.
A cell membrane has a central layer that is lipophilic (hydrophobic). The IUPAC definition of
lipophilic is:
Having an affinity for fat and high lipid solubility: a physicochemical property which describes a
partitioning equilibrium of solute molecules between water and an immiscible organic solvent,
favouring the latter, and which correlates with bioaccumulation.
The relative solubility of a substance in water and an organic solvent (water-immiscible) is a
measure of lipophilicity.
Experiments have shown that lipophilicity is an important property of a drug that influences passive
transport across cell membranes. A drug molecule needs to be sufficiently lipophilic that it enters
the lipid core of a cell membrane, but not so lipophilic that it is held in that core and does not move
into the cell.
Partition coefficient
In drug discovery and development, lipophilicity is usually
expressed by the partition between water and octan-1-ol.
The partition coefficient, P, of a drug is given by
[ ]
[ ]
where
[drug]octan-1-ol = concentration of drug in octan-1-ol
[drug]water = concentration of drug in water
A sample of the drug is shaken with a mixture of octan-1-ol and
water and its concentration in each layer is determined.
It is usual to give the logP value (the logarithm to the base 10 of
the partition coefficient). Sometimes a value is calculated - from
knowledge of the molecular structure - rather that determined
experimentally. These values are denoted by using clogP.
The drug molecule must be unionised in aqueous solution.
Distribution coefficient
Most drugs, however, are weak acids or weak bases that partially ionise when dissolved in water.
2
HA = acid (the drug molecule); H2O = base
A = conjugate base (the drug anion); H3O+ =
conjugate acid
B = base (the drug molecule); H2O = acid
OH = conjugate base (the drug anion); BH+ =
conjugate acid
1
See Pharmacokinetic processes: absorption.
2
See Ionisation of drug molecules and Drugs and acid dissociation constants.
Figure1 The shake flask method.
Water
layer
Octan-1-ol
layer
Figure 2 Partition between
octan-1-ol and water.
[drug]octan-1-ol
pf2

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1

Partition and distribution coefficients

Absorption of drugs

There are a number of ways that drugs are absorbed,^1 but the most common route is passive transport (diffusion). Passive transport does not require an input of energy.

A cell membrane has a central layer that is lipophilic (hydrophobic). The IUPAC definition of lipophilic is:

‘Having an affinity for fat and high lipid solubility: a physicochemical property which describes a partitioning equilibrium of solute molecules between water and an immiscible organic solvent, favouring the latter, and which correlates with bioaccumulation.’

The relative solubility of a substance in water and an organic solvent (water-immiscible) is a measure of lipophilicity.

Experiments have shown that lipophilicity is an important property of a drug that influences passive transport across cell membranes. A drug molecule needs to be sufficiently lipophilic that it enters the lipid core of a cell membrane, but not so lipophilic that it is held in that core and does not move into the cell.

Partition coefficient

In drug discovery and development, lipophilicity is usually expressed by the partition between water and octan-1-ol.

The partition coefficient, P , of a drug is given by

[ ] [ ] where

[drug]octan-1-ol = concentration of drug in octan-1-ol

[drug]water = concentration of drug in water

A sample of the drug is shaken with a mixture of octan-1-ol and water and its concentration in each layer is determined.

It is usual to give the log P value (the logarithm to the base 10 of the partition coefficient). Sometimes a value is calculated - from knowledge of the molecular structure - rather that determined experimentally. These values are denoted by using clog P.

The drug molecule must be unionised in aqueous solution.

Distribution coefficient

Most drugs, however, are weak acids or weak bases that partially ionise when dissolved in water.^2

HA = acid (the drug molecule); H 2 O = base

A−^ = conjugate base (the drug anion); H 3 O+^ = conjugate acid

B = base (the drug molecule); H 2 O = acid OH−^ = conjugate base (the drug anion); BH+^ = conjugate acid

(^1) See Pharmacokinetic processes: absorption. (^2) See Ionisation of drug molecules and Drugs and acid dissociation constants.

Figure1 The shake flask method.

Water layer

Octan-1-ol layer

Figure 2 Partition between octan-1-ol and water.

[drug]octan- 1 - ol

[drug]water

2

The pH of the aqueous solution affects the proportion of molecular and ionised forms of the drug.

The distribution constant, D , of a drug is given by:

[ ] [ ] [ ] where

[drug molecule]octan-1-ol = concentration of drug in its molecular form in octan-1-ol

[drug molecule]water = concentration of drug in its molecular form in water

[drug ion]water = concentration of drug in its ionised form in water

The distribution constant is pH dependent and the term log D is used to reflect the pH dependent lipophilicity of a drug.

The lower the pH of an aqueous solution, the further to the left is the position of equilibrium, i.e. increasing [drug molecule]water and decreasing [drug ion]water.

Below a certain pH, [drug ion]water becomes close to zero. This is shown in the graphs in figure 3. For each compound the horizontal part of the curve shows when log D = log P , in other words the range when distribution is not pH dependent.

Finding out

What apparatus is used in the shake-flask method for determining distribution coefficients and how is the test carried out?

What are the modern alternatives to the shake-flask method?

physiological pH range

Figure 3 Graphs of log D against pH for six drugs. Those shown in red are acids. Those in blue are bases. (Data courtesy of Sirius Analytical).

Diclofenac ( A ) is a non-steroidal anti- inflammatory drug

Desipramine (F) is an antidepressant

A B C D E F

A : Diclofenac pKa = 3. B : Phenobarbitol pKa = 7. C : Nifuroxide pKa = 10. D : Triamterene pKa = 3. E : Diphenhydramine pKa = 8. F : Desipramine pKa = 10.