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Principles of Biology: Problem Set I - Isotopes, Electron Shells, and Chemical Bonds - Pro, Study notes of Biology

A problem set for a principles of biology lab, focusing on topics such as isotopes, electron shells, and chemical bonds. Students are asked to determine the number of protons, neutrons, and electrons in 15n, compare it to 14n, predict the properties of 13n, draw electron shell diagrams for magnesium and chlorine, determine the bonds magnesium chloride forms, and identify the polarity and bond types of various molecules.

Typology: Study notes

2009/2010

Uploaded on 12/10/2010

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Name__________________________ Lab Instructor____________________
Principles of Biology - Problem Set I
Bio-Chemistry
Answer all of the following questions and turn in to your lab instructor by Thursday 9/9 4pm sharp.
You are welcome and encouraged to work in groups to learn, but you must turn in your own work.
1. You have just ordered some 15N - ammonium sulfate, a good nitrogen source that you can feed to
bacteria so that they will incorporate 15N in their proteins. You wish to conduct experiments using 15N
isotopically labeled proteins that can be detected by an instrument called NMR for structural studies. a)
How many protons, neutrons and electrons does 15N have? b) Compare this to the more common 14N. c)
Do you predict 13N to be a radioisotope? Why or why not. d) Do you think the bonding properties of
15N will be the same or different than common 14N. Briefly explain in one sentence. (4pts)
2. Magnesium chloride is a common reagent that molecular biologists add to their reactions in order to
synthesize DNA, such as a PCR reaction (polymerase chain reaction). We will be running PCR
reactions in a few weeks in lab. The magnesium is important for stabilizing the reactants (nucleotides).
a) Draw the electron shell diagram for magnesium and an electron shell diagram for chlorine. b) Based
on the electron properties, how many bonds does magnesium like to make? Write out magnesium
chloride’s chemical formula. c) Do you think that this compound will be soluble in water? Briefly
explain in one sentence. (3pts)
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Name__________________________ Lab Instructor____________________

Principles of Biology - Problem Set I

Bio-Chemistry

Answer all of the following questions and turn in to your lab instructor by Thursday 9/9 4pm sharp. You are welcome and encouraged to work in groups to learn, but you must turn in your own work.

  1. You have just ordered some 15 N - ammonium sulfate, a good nitrogen source that you can feed to bacteria so that they will incorporate 15 N in their proteins. You wish to conduct experiments using 15 N isotopically labeled proteins that can be detected by an instrument called NMR for structural studies. a) How many protons, neutrons and electrons does 15 N have? b) Compare this to the more common 14 N. c) Do you predict 13 N to be a radioisotope? Why or why not. d) Do you think the bonding properties of (^15) N will be the same or different than common 14 N. Briefly explain in one sentence. (4pts)
  2. Magnesium chloride is a common reagent that molecular biologists add to their reactions in order to synthesize DNA, such as a PCR reaction (polymerase chain reaction). We will be running PCR reactions in a few weeks in lab. The magnesium is important for stabilizing the reactants (nucleotides). a) Draw the electron shell diagram for magnesium and an electron shell diagram for chlorine. b) Based on the electron properties, how many bonds does magnesium like to make? Write out magnesium chloride’s chemical formula. c) Do you think that this compound will be soluble in water? Briefly explain in one sentence. (3pts)

C

Cl

H

Cl

Cl

  1. Draw a water molecule and a molecule of ammonia (NH 3 ). Indicate the small positive and negative charges in each molecule. Draw an arrow showing the direction of the polarity for each molecule (pointing toward the small negative charge). Draw a hydrogen bonding interaction (using dotted lines) between these molecules. (3pts)
  2. Use the following electronegativity values to answer the questions below: (5pts) i. Indicate whether each molecule is polar or non-polar (a through e, ½ pt each): carbon dioxide chloroform a. ________________ b. _____________ Atom Electronegativity (EN) value F 4. O 3. Cl 3. N 3. C 2. H 2. Na 0.
  1. The pH in most organisms is kept relatively constant by buffers which minimize changes in pH. The buffering system below using the following weak acid and weak base help to regulate the pH of blood: (5pts)

H 2 CO 3 ↔ HCO 3 -^ + H+

a. Which molecule is an acid? Why? (1 pt) b. If your blood pH drops (the H+^ concentration in the blood begins to increase) describe what will happen to the weak acid and weak base in this buffering system to compensate. (1 pt) c. If the pH of your blood changed from pH 7 to pH 6, did the [H+] increase or decrease and by how much? (1 pt)

d. H 2 CO 3 is formed by addition of carbon dioxide to your blood: CO 2 + H 2 O ↔ H 2 CO 3

What would happen to the pH if there was an increase in the concentration of CO 2? (1 pt) e. If you were to hyperventilate ie exhale large amounts of CO 2 , explain what happens to [H+] in your blood? (1pt)