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Organic Compound Naming: A Guide to IUPAC Nomenclature, Study notes of Communication

IUPAC nomenclature is based on naming a molecule's longest chain of carbons connected by single bonds, whether in a continuous chain or in a ring. All ...

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Short Summary of IUPAC Nomenclature of Organic Compounds
Introduction
The purpose of the IUPAC system of nomenclature is to establish an international standard of
naming compounds to facilitate communication. The goal of the system is to give each structure
a unique and unambiguous name, and to correlate each name with a unique and unambiguous
structure.
I.
Fundamental Principle
IUPAC nomenclature is based on naming a molecule’s longest chain of carbons connected by
single bonds, whether in a continuous chain or in a ring. All deviations, either multiple bonds or
atoms other than carbon and hydrogen, are indicated by prefixes or suffixes according to a
specific set of priorities.
II.
Alkanes and
Cycloalkanes
Alkanes are the family of saturated hydrocarbons, that is, molecules containing carbon and
hydrogen connected by single bonds only. These molecules can be in continuous chains (called
linear or acyclic), or in rings (called cyclic or alicyclic). The names of alkanes and cycloalkanes
are the root names of organic compounds. Beginning with the five-carbon alkane, the number of
carbons in the chain is indicated by the Greek or Latin prefix. Rings are designated by the prefix
“cyclo”. (In the geometrical symbols for rings, each apex represents a carbon with the number of
hydrogens required to fill its valence.)
CH4methane CH3[CH2]10CH3dodecane
CH3CH3ethane CH3[CH2]11CH3tridecane
CH3CH2CH3propane CH3[CH2]12CH3tetradecane
CH3[CH2]2CH3butane CH3[CH2]18CH3icosane
CH3[CH2]3CH3 pentane CH3[CH2]19CH3henicosane
CH3[CH2]4CH3hexane CH3[CH2]20CH3docosane
CH3[CH2]5CH3heptane CH3[CH2]21CH3tricosane
CH3[CH2]6CH3octane CH3[CH2]28CH3triacontane
CH3[CH2]7CH3nonane CH3[CH2]29CH3hentriacontane
CH3[CH2]8CH3decane CH3[CH2]38CH3tetracontane
CH3[CH2]9CH3undecane CH3[CH2]48CH3pentacontane
cyclooctanecycloheptanecyclohexane
cyclopentanecyclobutanecyclopropane
C
C
C
H H
H
HH
H
pf3
pf4
pf5
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Short Summary of IUPAC Nomenclature of Organic Compounds

Introduction The purpose of the IUPAC system of nomenclature is to establish an international standard of naming compounds to facilitate communication. The goal of the system is to give each structure a unique and unambiguous name, and to correlate each name with a unique and unambiguous structure.

I. Fundamental Principle IUPAC nomenclature is based on naming a molecule’s longest chain of carbons connected by single bonds, whether in a continuous chain or in a ring. All deviations, either multiple bonds or atoms other than carbon and hydrogen, are indicated by prefixes or suffixes according to a specific set of priorities.

II. Alkanes and Cycloalkanes Alkanes are the family of saturated hydrocarbons, that is, molecules containing carbon and hydrogen connected by single bonds only. These molecules can be in continuous chains (called linear or acyclic), or in rings (called cyclic or alicyclic). The names of alkanes and cycloalkanes are the root names of organic compounds. Beginning with the five-carbon alkane, the number of carbons in the chain is indicated by the Greek or Latin prefix. Rings are designated by the prefix “cyclo”. (In the geometrical symbols for rings, each apex represents a carbon with the number of hydrogens required to fill its valence.)

CH 4 methane CH 3 [CH 2 ] 10 CH 3 dodecane CH 3 CH 3 ethane CH 3 [CH 2 ] 11 CH 3 tridecane CH 3 CH 2 CH 3 propane CH 3 [CH 2 ] 12 CH 3 tetradecane CH 3 [CH 2 ] 2 CH 3 butane CH 3 [CH 2 ] 18 CH 3 icosane CH 3 [CH 2 ] 3 CH 3 pentane CH 3 [CH 2 ] 19 CH 3 henicosane CH 3 [CH 2 ] 4 CH 3 hexane CH 3 [CH 2 ] 20 CH 3 docosane CH 3 [CH 2 ] 5 CH 3 heptane CH 3 [CH 2 ] 21 CH 3 tricosane CH 3 [CH 2 ] 6 CH 3 octane CH 3 [CH 2 ] 28 CH 3 triacontane CH 3 [CH 2 ] 7 CH 3 nonane CH 3 [CH 2 ] 29 CH 3 hentriacontane CH 3 [CH 2 ] 8 CH 3 decane CH 3 [CH 2 ] 38 CH 3 tetracontane CH 3 [CH 2 ] 9 CH 3 undecane CH 3 [CH 2 ] 48 CH 3 pentacontane

cyclohexane cycloheptane cyclooctane

cyclopropane cyclobutane cyclopentane

C

C

C

H H

H

H H

H

III. Nomenclature of Molecules Containing Substituents and Functional Groups

A. Priorities of Substituents and Functional Groups LISTED HERE FROM HIGHEST TO LOWEST PRIORITY, except that the substituents within Group C have equivalent priority.

Family of Compound

Alkene

Alkyne

Structure Prefix

Suffix

-ene

-yne

Suffix

-oic acid (-carboxylic acid)

-al (carbaldehyde)

-one

-ol

-amine

Prefix

carboxy-

oxo- (formyl)

oxo-

hydroxy-

amino-

Family of Compound Structure

Carboxylic Acid

Aldehyde

Ketone

Alcohol

Amine

R C

O

OH

C H

O

R

R C

O

R

O H

N

R

R

C C

C C

Group A—Functional Groups Indicated By Prefix Or Suffix

Group B—Functional Groups Indicated By Suffix Only

Group C—Substituents Indicated by Prefix Only

Substituent Structure Prefix Suffix

Alkyl (see list below) R alkyl- ----------

Alkoxy R O alkoxy- ----------

Halogen F fluoro- ---------- Cl chloro- ---------- Br bromo- ---------- I iodo- ----------

Group C continued on next page

Examples

1- sec -butyl-3-nitrocyclohexane (numbering determined by the alphabetical order of substituents)

3-bromo-2-chloro-5-ethyl-4,4-dimethyloctane 3-fluoro-4-isopropyl-2-methylheptane

6 7 6

4

5

4 5

1

3

3

2

2

1

8 7

6

5 4

1 2 3

H 3 C CHCH 2 CH 3

NO 2

CH CH CHCH 3

CH 2 CH 2 CH 3

CH 3

CH 3 CH CH C

Br CH 3

CH

CH 2 CH 2 CH 3

CH

CH 3

CH 3

Cl

CH 2 CH 3

CH 3

F

C. Naming Molecules Containing Functional Groups from Group B—Suffix Only

  1. Alkenes—Follow the same steps as for alkanes, except:

a. Number the chain of carbons that includes the C=C so that the C =C has the lower

position number, since it has a higher priority than any substituents;

b. Change “ane” to “ene” and assign a position number to the first carbon of the C =C;

c. Designate geometrical isomers with a cis,trans or E,Z prefix.

1

2 3

4

5

4,4-difluoro-3-methylbut-1-ene 1,1-difluoro-2-methyl- buta-1,3-diene 5-methylcyclopenta- 1,3-diene

CH CH CH CH 2

F

F CH 3

C

CH 3

C

F

F

CH CH 2

CH 3

Special case: When the chain cannot include the C=C, a substituent name is used.

CH CH 2 3-vinylcyclohex-1-ene

  1. Alkynes—Follow the same steps as for alkanes, except:

a. Number the chain of carbons that includes the CtC so that the functional group has the

lower position number;

b. Change “ane” to “yne” and assign a position number to the first carbon of the CtC.

Note: The Group B functional groups (alkene and alkyne) are considered to have equal priority: in a molecule with both a double and a triple bond, whichever is closer to the end of the chain determines the direction of numbering. In the case where each would have the same position number, the double bond takes the lower number. In the name, “ene” comes before “yne” because of alphabetization. See examples on next page.

4,4-difluoro-3-methylbut-1-yne

pent-3-en-1-yne pent-1-en-4-yne ("ene" and "yne" have equal priority unless they have the same position number, when "ene" takes the lower number)

CH

CH 3

CH

F

F

C CH HC C C CHCH 3 HC C CH 2 CH CH 2

H

1 2 3 4 5 5 4 3 2 1

("yne" closer to end of chain)

(Notes: 1. An “e” is dropped if the letter following it is a vowel: “pent-3-en-1-yne” , not “3- pent-3-ene-1-yne”. 2. An “a” is added if inclusion of di, tri, etc ., would put two consonants consecutively: “buta-1,3-diene”, not “but-1,3-diene”.)

D. Naming Molecules Containing Functional Groups from Group A—Prefix or Suffix

In naming molecules containing one or more of the functional groups in Group A, the group of highest priority is indicated by suffix; the others are indicated by prefix, with priority equivalent to any other substituents. The table in Section III .A. defines the priorities; they are discussed below in order of increasing priority.

Now that the functional groups and substituents from Groups A, B, and C have been described, a modified set of steps for naming organic compounds can be applied to all simple structures: •Step 1. Find the highest priority functional group. Determine and name the longest continuous carbon chain that includes this group. •Step 2. Number the chain so that the highest priority functional group is assigned the lower number. •Step 3. If the carbon chain includes multiple bonds (Group B), replace “ane” with “ene” for an alkene or “yne” for an alkyne. Designate the position of the multiple bond with the number of the first carbon of the multiple bond. •Step 4. If the molecule includes Group A functional groups, replace the last “e” with the suffix of the highest priority functional group, and include its position number. •Step 5. Indicate all Group C substituents, and Group A functional groups of lower priority, with a prefix. Place the prefixes, with appropriate position numbers, in alphabetical order before the root name.

  1. Amines: prefix: amino-; suffix: -amine—substituents on nitrogen denoted by “ N

3-methoxycyclohexan-1-amine N , N -diethylbut-3-en-2-amine ("1" is optional in this case)

propan-1-amine

CH 3 CH 2 CH 2 NH 2

CH 3 O NH 2

CH 2 CH CHCH 3

N

CH 3 CH 2 CH 2 CH 3

2-formyl-4-oxocyclohexanecarboxylic acid ("formyl" is used to indicate an aldehyde as a substituent when its carbon cannot be in the chain numbering)

COOH

CHO

O

1

3 2

4

E. Naming Carboxylic Acid Derivatives The six common groups derived from carboxylic acids are salts, anhydrides, esters, acyl halides, amides, and nitriles. Salts and esters are most important.

  1. Salts of Carboxylic Acids Salts are named with cation first, followed by the anion name of the carboxylic acid, where “ ic acid ” is replaced by “ ate ” :

acet ic acid becomes acet ate butano ic acid becomes butano ate cyclohexanecarboxyl ic acid becomes cyclohexanecarboxyl ate

  1. Esters Esters are named as “organic salts” that is, the alkyl name comes first, followed by the name of the carboxylate anion. (common abbreviation: —COOR)

isopropyl 2,2-dimethylpropanoate

ethyl acetate "alkyl alkanoate"

"alkanoate" "alkyl"

carboxylate alkyl

C O

O

R R H 3 C C

O

O CH 2 CH 3 H 3 C C

CH 3

CH 3

C

O

O CHCH 3

CH 3

methyl 3-hydroxycyclopentanecarboxylate

cyclohexyl 2-phenylacetate

vinyl prop-2-enoate

CH 2 CH C

O

O CH CH 2

HO C

O

OCH 3

CH 2 COO

IV. Nomenclature of Aromatic Compounds

“Aromatic” compounds are those derived from benzene and similar ring systems. As with aliphatic nomenclature described above, the process is: determining the root name of the parent ring; determining priority, name, and position number of substituents; and assembling the name in alphabetical order. Functional group priorities are the same in aliphatic and aromatic nomenclature.

A. Common Parent Ring Systems

naphthalene anthracene

benzene

8 7

6 5 4

3

2 2

1

10

8 9 7

6 4 5

3

1

or

B. Monosubstituted Benzenes

  1. Most substituents keep their designation, followed by the word “benzene”:

chlorobenzene nitrobenzene ethylbenzene

Cl NO 2 CH 2 CH 3

  1. Some common substituents change the root name of the ring. IUPAC accepts these as root names, listed here in decreasing priority:

benzene- benzaldehyde phenol aniline anisole toluene sulfonic acid

benzoic acid

COOH SO 3 H CHO OH NH 2 OCH 3 CH 3

C. Disubstituted Benzenes

  1. Designation of substitution—only three possibilities:

para- 1,4-

meta- 1,3-

ortho- 1,2-

common: IUPAC:

X X X

Y

Y

Y

  1. Naming disubstituted benzenes—Priorities determine root name and substituents

2-methoxybenzaldehyde 3-methylphenol

3-aminobenzoic acid 1,4-dibromobenzene

Br

Br

NH 2

COOH

OCH 3

CHO CH 3

HO