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The basics a) Define the term "silent mutation". Silent mutations are DNA mutations that do not result in a change to the amino acid sequence of a protein.
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b) Perform a global multiple sequence alignment on the following sequences and report the alignment and Sum-of-Pairs score. Use Seq1 as Sc in both (center of star tree). MATCH = +1, MISMATCH = - 1 , GAP = - 1. Seq1: AGT Seq2: ACT Seq3: AGAT Seq1: AGT Seq2: ACT Seq1: AG-T Seq3: AGAT
4. Genome alignment Briefly describe what is depicted in the dot plot below: A large scale inversion event between genome A & genome B.
4. Data structures: Suffix trees a) Given the following string, construct a suffix tree of ATGTAG a) Label the path of the string GTAG in the above suffix tree. Give the time complexity of finding a query of length ‘n’.